Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20882
         (751 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26755| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.00 
SB_57195| Best HMM Match : UPF0126 (HMM E-Value=1.8)                   31   1.00 
SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             30   1.7  
SB_51458| Best HMM Match : CAMP_factor (HMM E-Value=7.4)               29   3.0  
SB_37321| Best HMM Match : Pkinase (HMM E-Value=2.4e-27)               29   4.0  
SB_58866| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=0)             29   5.3  
SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_18764| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_29595| Best HMM Match : RNA_pol_Rpb2_6 (HMM E-Value=1.90001e-40)    28   9.3  

>SB_26755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1607

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +1

Query: 67  LRRAPVTYTAVNVLSSLAFLKKTYCPMI--TGVVFRTQHEVTAEGFVLDI 210
           LR +P T TA+   ++     +TYC  I  T +     HEV+++GF  DI
Sbjct: 614 LRLSPPTATALTFKNAKLVNGQTYCTKIKATNMADVFSHEVSSDGFTADI 663


>SB_57195| Best HMM Match : UPF0126 (HMM E-Value=1.8)
          Length = 1699

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +1

Query: 67  LRRAPVTYTAVNVLSSLAFLKKTYCPMI--TGVVFRTQHEVTAEGFVLDI 210
           LR +P T TA+   ++     +TYC  I  T +     HEV+++GF  DI
Sbjct: 560 LRLSPPTATALTFKNAKLVNGQTYCTKIKATNMADVFSHEVSSDGFTADI 609


>SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 1980

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +2

Query: 551 VLTLSSDTYVSVLIGSQREEPPHIPRCSGYLAETGLDYVESLCTC 685
           VL+     Y S L  S R  P H+PRC+ Y A   +  ++  C C
Sbjct: 563 VLSPCQQRYQSTLRSSLR--PVHVPRCNQYGAYENVQCIKDSCFC 605


>SB_51458| Best HMM Match : CAMP_factor (HMM E-Value=7.4)
          Length = 351

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
 Frame = -3

Query: 737 IICSVMAYTSVVFAHGTRKYINSLRNPIQFLQDSRSTVVYEEVLHVDFQLEP-IRTYLKT 561
           +I S++ Y + V+++ T      L N I+ +Q     +++  + + D+ ++  IR+    
Sbjct: 230 LIRSILEYGAPVYSNLTE----FLSNAIERIQQRALKIIFPGIPYSDYLMKAGIRSLKDR 285

Query: 560 ASE--RFFEKAARHDNPLRYGATQSRCSPKH 474
            +E  + F ++ R DNPL   A+     P H
Sbjct: 286 RAELCKEFMRSLRRDNPLHQIASSRTTKPLH 316


>SB_37321| Best HMM Match : Pkinase (HMM E-Value=2.4e-27)
          Length = 592

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +1

Query: 142 PMITGVVFRTQHEVTAEGFVLDIPSSFQEFHLFLFLNLS 258
           P +T   FRT+H   +  F  D+P S    H    L  S
Sbjct: 413 PRVTSTTFRTRHRTLSARFFSDVPESHVYVHRISCLRTS 451


>SB_58866| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=0)
          Length = 567

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
 Frame = -3

Query: 746 KACIICSVMAY---TSVVFAHGTRKYINSLRNPIQFLQDSRSTVVYEEVLHVDFQLEPIR 576
           K  ++CS   Y   T   F      Y+  LR+P+   + + S + + E+L +  + + + 
Sbjct: 120 KPNVLCSHARYNRATLTSFMPNDTVYVTILRDPVTQFESTFSYMKFSELLGISNESDALE 179

Query: 575 TYLKTASE 552
           T+L+   E
Sbjct: 180 TFLEKPKE 187


>SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1438

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 169 TQHEVTAEGFVLDIPSSFQEFHLFLFLNLSLVAEEAIP 282
           T+H V      L +  S Q+ HLFLF +L ++A+   P
Sbjct: 268 TRHFVQEGSAQLSVGISSQDRHLFLFSDLLIIAKPKTP 305


>SB_18764| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 284

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 611 PPHIPRCSGYLAETGLDYVESLCTCGSRER 700
           P +IP C G++  TG +  E    C +R +
Sbjct: 35  PQNIPWCLGFIGRTGFESNEEKSDCSNRSK 64


>SB_29595| Best HMM Match : RNA_pol_Rpb2_6 (HMM E-Value=1.90001e-40)
          Length = 700

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +1

Query: 343 PKQCFVESSTGSE--SRPTEKIRRER*PVIGEPKSTESGSGGSC 468
           PK   +   TG +  S+   K+R +R P+IG+  S+  G  G C
Sbjct: 379 PKVKIIGDETGDKTLSKACIKLRIQRNPIIGDKFSSRHGQKGIC 422


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,764,273
Number of Sequences: 59808
Number of extensions: 526606
Number of successful extensions: 1340
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)