Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20882
         (751 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00220.1 68417.m00023 LOB domain protein 30 / lateral organ b...    32   0.47 
At3g11325.1 68416.m01377 hypothetical protein                          31   0.82 
At5g06480.1 68418.m00726 MD-2-related lipid recognition domain-c...    29   3.3  
At4g30440.1 68417.m04323 NAD-dependent epimerase/dehydratase fam...    29   3.3  
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati...    29   3.3  
At5g65700.1 68418.m08269 leucine-rich repeat transmembrane prote...    29   4.4  
At5g09840.1 68418.m01138 expressed protein contains Pfam profile...    28   5.8  

>At4g00220.1 68417.m00023 LOB domain protein 30 / lateral organ
           boundaries domain protein 30 (LBD30) identical to LOB
           DOMAIN 30 [Arabidopsis thaliana] GI:16660632; supported
           by full-length cDNA gi:16660631
          Length = 228

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +1

Query: 427 GEPKSTESGSGGSCKTCFGLHRLCVA 504
           G P S+  G GG C  C  L R CVA
Sbjct: 5   GNPSSSSGGGGGPCGACKFLRRKCVA 30


>At3g11325.1 68416.m01377 hypothetical protein
          Length = 401

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -2

Query: 225 LERAGDV*HKTLCCDLVLCPEYNTC 151
           ++R  DV  KT+  DLV+CPE +TC
Sbjct: 243 IQRIRDVDAKTIKLDLVICPEGSTC 267


>At5g06480.1 68418.m00726 MD-2-related lipid recognition
           domain-containing protein / ML domain-containing protein
           contains Pfam profile PF02221: ML domain
          Length = 153

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +3

Query: 81  RDLHGSQCVEQFGFFEEDVLSNDHRCCIQDTARGHSRGFCVRHPQLFPGISP 236
           R++   + V +  +F   V S  H  C + +    +  F V H Q+ PG +P
Sbjct: 66  REISFGKLVIEVSYFGWHVHSETHDLCTETSCPIQTGDFLVAHSQVLPGYTP 117


>At4g30440.1 68417.m04323 NAD-dependent epimerase/dehydratase family
           protein similar to nucleotide sugar epimerase from
           Vibrio vulnificus GI:3093975 [PID:g3093975], WbnF
           [Escherichia coli] GI:5739472, CAPI protein
           {Staphylococcus aureus} SP|P39858; contains Pfam profile
           PF01370 NAD dependent epimerase/dehydratase family
          Length = 429

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 446 SVLLGSPITGHRSRRIFSVGRDSDPVEDSTKHCFG 342
           ++L G PIT +R +    + RD   ++D  K C G
Sbjct: 286 NILQGKPITIYRGKNRVDLARDFTYIDDIVKGCLG 320


>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
           similar to mitochondrial elongation factor GI:3917 from
           [Saccharomyces cerevisiae]
          Length = 754

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
 Frame = +1

Query: 64  ALRRAPVTYTAVNVLSSLAFLKKTYCPMITGVVFRTQHEVTAEGFVLDIPSSFQEFHLFL 243
           A+RRA +  T V V    AF  K   P++ GVV           + LD  ++ +   L  
Sbjct: 301 AIRRATIAQTFVPVFMGSAFKNKGVQPLLDGVVSFLPSPNEVNNYALDQNNNEERVTLTG 360

Query: 244 FLNLSLVA-EEAIPLGRIGELT 306
             +  LVA    +  GR G+LT
Sbjct: 361 SPDGPLVALAFKLEEGRFGQLT 382


>At5g65700.1 68418.m08269 leucine-rich repeat transmembrane protein
            kinase, putative
          Length = 1003

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 524  DNPLRYGATQSRCSPKHVLQDPPDPLSV 441
            D P+   A +S  SPK  +Q PPD L++
Sbjct: 976  DQPMTESAPESELSPKSGVQSPPDLLNL 1003


>At5g09840.1 68418.m01138 expressed protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 924

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -2

Query: 483 SKTCLTGSSRSTLGAFRLSNYWSPFSPDLLSGSRFRSG 370
           S +  T S R T+  F  + + SPFS    SGS F SG
Sbjct: 16  SSSSTTQSHRRTITLFITNIHSSPFSTTTTSGSNFVSG 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,066,008
Number of Sequences: 28952
Number of extensions: 364271
Number of successful extensions: 1099
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)