Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20881
         (774 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               160   1e-39
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)                   32   0.59 
SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)                 31   1.0  
SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)                  30   2.4  
SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)                29   4.2  
SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)         29   4.2  
SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)                      29   5.5  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  160 bits (388), Expect = 1e-39
 Identities = 72/85 (84%), Positives = 79/85 (92%)
 Frame = +2

Query: 254 QNPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPA 433
           +NPADV VIS+RP+GQRA+LK+A+HTGATPIAGRFTPG FTNQIQAAFREPRLLIV DP 
Sbjct: 69  ENPADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPRLLIVCDPR 128

Query: 434 QDHQPITEASYVNIPVIALCNTDSP 508
            DHQP+TEASYVNIPVIA CNTDSP
Sbjct: 129 IDHQPVTEASYVNIPVIAFCNTDSP 153



 Score =  101 bits (243), Expect = 5e-22
 Identities = 43/65 (66%), Positives = 54/65 (83%)
 Frame = +1

Query: 505 PIRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEK 684
           P+R VD+AIPCN K  HSIGLM+WLLAREVLR+RG + R   W+++ DL+FYRDPEE+EK
Sbjct: 153 PLRHVDVAIPCNNKGIHSIGLMFWLLAREVLRMRGSISRALPWEIMPDLYFYRDPEEAEK 212

Query: 685 DEQQA 699
           +EQ A
Sbjct: 213 EEQAA 217



 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 40/71 (56%), Positives = 49/71 (69%)
 Frame = +3

Query: 51  MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKXXX 230
           MSGGLD+L L EEDV K LAA  HLGA N +FQME YVYKR++DG ++IN+++TWEK   
Sbjct: 1   MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLL 60

Query: 231 XXXXXXXIRTP 263
                  I  P
Sbjct: 61  AARIIVTIENP 71


>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 1772

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -2

Query: 650  KSTTTSQRWSRGSTPRSLSTSRANNHHIKPIEWEDLVLHGIAMST 516
            K+TT   RWS+G TP      ++   H   I    L+ HG   ST
Sbjct: 1396 KTTTDKTRWSKGQTPNGKVAQKSKFQH--GIAGTQLIYHGTGPST 1438


>SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 965

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = -3

Query: 496  VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRRST 332
            V  SN  +V +    N   + CR Q NQ T FT   +  ++    C+T RN RS+
Sbjct: 876  VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMRSS 930


>SB_49472| Best HMM Match : BDS_I_II (HMM E-Value=1.5)
          Length = 315

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 553 HSIGLMWWLLAREVLRLRGVLP 618
           H  G +WW+L  E LR + VLP
Sbjct: 46  HDDGSVWWVLTSESLRAKAVLP 67


>SB_54185| Best HMM Match : Gal_Lectin (HMM E-Value=2.3)
          Length = 225

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -3

Query: 496 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRR 338
           V  SN  +V +    N   + CR Q NQ T FT   +  ++    C+T RN R
Sbjct: 155 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 207


>SB_43606| Best HMM Match : Y_phosphatase (HMM E-Value=3.9e-26)
          Length = 280

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -3

Query: 496 VAQSNHRNVDI*SFSNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRR 338
           V  SN  +V +    N   + CR Q NQ T FT   +  ++    C+T RN R
Sbjct: 196 VYNSNKGSVRVHPSDNSGSLNCRKQTNQTTAFTWPGVVNLTWKRGCQTMRNMR 248


>SB_50413| Best HMM Match : GRP (HMM E-Value=0.15)
          Length = 487

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -1

Query: 663 TVEEQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVGR-LGVAWDSNVHK 514
           +V  Q+  + P  +T  HT+     T   P HQ + +GR  G   DSNV +
Sbjct: 241 SVTNQMRGHEPRSITYNHTSITAPLTTGYPDHQGSYMGRYAGSVADSNVSR 291


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,337,145
Number of Sequences: 59808
Number of extensions: 607372
Number of successful extensions: 1495
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1491
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)