Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20880
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47069-3|CAE17781.1| 141|Caenorhabditis elegans Hypothetical pr... 73 2e-13
U67956-1|AAB07690.2| 157|Caenorhabditis elegans Hypothetical pr... 57 2e-08
AL110500-20|CAI79282.1| 110|Caenorhabditis elegans Hypothetical... 47 2e-05
AC084153-15|AAK84589.2| 152|Caenorhabditis elegans Hypothetical... 44 1e-04
AL110500-18|CAB54478.1| 118|Caenorhabditis elegans Hypothetical... 41 0.001
U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class glut... 40 0.002
AL032627-14|CAA21549.1| 386|Caenorhabditis elegans Hypothetical... 40 0.002
AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type ion... 40 0.002
AF068714-8|AAC17809.2| 86|Caenorhabditis elegans Hypothetical ... 39 0.004
AL032626-6|CAA21526.1| 132|Caenorhabditis elegans Hypothetical ... 37 0.013
AL032626-7|CAA21544.1| 79|Caenorhabditis elegans Hypothetical ... 36 0.041
AL033510-7|CAA22069.1| 124|Caenorhabditis elegans Hypothetical ... 35 0.071
AF068714-9|AAC17810.1| 87|Caenorhabditis elegans Hypothetical ... 33 0.22
AL032626-23|CAE17974.1| 88|Caenorhabditis elegans Hypothetical... 32 0.38
Z81464-6|CAB03856.2| 102|Caenorhabditis elegans Hypothetical pr... 32 0.50
AC006610-4|AAK85450.1| 246|Caenorhabditis elegans Hypothetical ... 32 0.50
Z19156-1|CAA79563.1| 160|Caenorhabditis elegans Hypothetical pr... 30 2.0
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 30 2.0
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 30 2.0
AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical ... 29 3.5
AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical ... 29 3.5
AF068721-4|AAC19260.1| 298|Caenorhabditis elegans Hypothetical ... 28 6.2
AF026214-3|AAB71312.2| 493|Caenorhabditis elegans Amino acid tr... 28 6.2
Z29443-11|CAK55173.1| 367|Caenorhabditis elegans Hypothetical p... 28 8.1
U41109-13|AAB37036.1| 264|Caenorhabditis elegans Posterior segr... 28 8.1
AY255666-1|AAQ96603.1| 164|Caenorhabditis elegans MPS-3 protein. 28 8.1
AF099925-9|AAC69500.1| 150|Caenorhabditis elegans Hypothetical ... 28 8.1
AF099925-7|AAO38626.1| 115|Caenorhabditis elegans Mirp k channe... 28 8.1
AF099925-6|AAC69501.1| 159|Caenorhabditis elegans Mirp k channe... 28 8.1
AF099925-5|AAZ94292.1| 164|Caenorhabditis elegans Mirp k channe... 28 8.1
AB006208-1|BAA33854.1| 264|Caenorhabditis elegans cytoplasmic z... 28 8.1
>Z47069-3|CAE17781.1| 141|Caenorhabditis elegans Hypothetical
protein F36G3.3 protein.
Length = 141
Score = 72.9 bits (171), Expect = 2e-13
Identities = 30/69 (43%), Positives = 38/69 (55%)
Frame = +2
Query: 245 P*TTSLTCPSCHAAIVTRVQHDASSKTHLFALILCLIGCWPCACIPYCMESCQNATHYCP 424
P T L CP C IVTR + T +F L L GCW C +P+C+ SC++ H CP
Sbjct: 70 PHATKLQCPYCRMDIVTRTKSVYGLLTWIFFAALFLFGCWCCCFLPFCLRSCKDIIHTCP 129
Query: 425 NCNAYIGTY 451
NC A IG +
Sbjct: 130 NCRAMIGVH 138
>U67956-1|AAB07690.2| 157|Caenorhabditis elegans Hypothetical
protein F16F9.1 protein.
Length = 157
Score = 56.8 bits (131), Expect = 2e-08
Identities = 26/61 (42%), Positives = 37/61 (60%)
Frame = +2
Query: 263 TCPSCHAAIVTRVQHDASSKTHLFALILCLIGCWPCACIPYCMESCQNATHYCPNCNAYI 442
TC SC + T + S T + IL LI +P A +P+C++SC++A HYCP CNA +
Sbjct: 92 TCYSCGKYVHTLPKFVIGSLTWI-VFILVLICFFPLAFVPFCLDSCKDAHHYCPRCNALL 150
Query: 443 G 445
G
Sbjct: 151 G 151
>AL110500-20|CAI79282.1| 110|Caenorhabditis elegans Hypothetical
protein Y87G2A.19 protein.
Length = 110
Score = 46.8 bits (106), Expect = 2e-05
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Frame = +2
Query: 260 LTCPSCHAAIVTRVQHDASSKTHLFALILCLIG--CWPC--ACIPYCMESCQNATHYCPN 427
L CP C T ++ T++ I+ + G P +P+C+E+ ++A HYCP+
Sbjct: 36 LDCPRCKVHGETELRFVNGFFTYVSFFIILIFGFAILPLFFLWVPFCVETFKDAEHYCPS 95
Query: 428 CNAYIGTY 451
C A+IGTY
Sbjct: 96 CRAWIGTY 103
>AC084153-15|AAK84589.2| 152|Caenorhabditis elegans Hypothetical
protein Y22D7AL.15 protein.
Length = 152
Score = 44.0 bits (99), Expect = 1e-04
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +2
Query: 266 CPSCHAAIVTRVQHDASSKTHLFALILCLIGCWPCA-CIPYCMESCQNATHYCPNCNAYI 442
CP C ++ TR H + + I + CWP C+ C ++ H+CPNC +
Sbjct: 88 CPRCQTSVTTRTVHSIGTCWWIILFIGVFVFCWPILYCL--CCAGSKDVKHFCPNCGTML 145
>AL110500-18|CAB54478.1| 118|Caenorhabditis elegans Hypothetical
protein Y87G2A.18 protein.
Length = 118
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Frame = +2
Query: 260 LTCPSCHAAIVTRVQHDASSKTHLFALILCLIGC------WPCACIPYCMESCQNATHYC 421
+ CP C IV+ ++ A + IL +G W C+P+ ++ + H C
Sbjct: 46 MDCPHCQNHIVSHIERVAGVLPWIIFAILAFLGIFLFIIPWCFCCVPFFLDQLLDVNHSC 105
Query: 422 PNCNAYIGTY 451
P C ++G +
Sbjct: 106 PACKKFLGRF 115
>U23486-8|AAC46779.3| 1025|Caenorhabditis elegans Nmda class glutamate
receptor protein1 protein.
Length = 1025
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = +2
Query: 299 VQHDASSKTHLFALILC----LIGCWPCACIPYCMESCQNATHYCPNCNAYIGTY 451
V+ D +T LFA + C ++ WPC+ +P + S + H CP C+ +G +
Sbjct: 961 VESDVHRETGLFAFLSCFLFAILFLWPCSPLPCFLSSFSDFVHICPLCSHIMGRF 1015
>AL032627-14|CAA21549.1| 386|Caenorhabditis elegans Hypothetical
protein Y41C4A.11 protein.
Length = 386
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/61 (29%), Positives = 24/61 (39%)
Frame = +2
Query: 266 CPSCHAAIVTRVQHDASSKTHLFALILCLIGCWPCACIPYCMESCQNATHYCPNCNAYIG 445
CP C I+T V L + CWP I C + ++ H CPNC +
Sbjct: 36 CPKCQTTIMTSVTTHIGMCWWLICFFGTFLFCWPIL-ICLCFDVSKDVDHNCPNCGLLLA 94
Query: 446 T 448
T
Sbjct: 95 T 95
>AF318613-1|AAK01101.2| 1025|Caenorhabditis elegans NMDA-type
ionotropic glutamatereceptor NMR-1 protein.
Length = 1025
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = +2
Query: 299 VQHDASSKTHLFALILC----LIGCWPCACIPYCMESCQNATHYCPNCNAYIGTY 451
V+ D +T LFA + C ++ WPC+ +P + S + H CP C+ +G +
Sbjct: 961 VESDVHRETGLFAFLSCFLFAILFLWPCSPLPCFLSSFSDFVHICPLCSHIMGRF 1015
>AF068714-8|AAC17809.2| 86|Caenorhabditis elegans Hypothetical
protein B0348.2 protein.
Length = 86
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +2
Query: 266 CPSCHAAIVTRVQHDASSKTHLFALILCLIGCWPCACIPYCMESCQNATHYCPNCNAYI 442
C C VTR + + + +I CL+ WP C C +S ++ HYCP+C +
Sbjct: 23 CQKCQCNQVTRTETQLGACWWVVFIIGCLL-FWPI-CYWLCCDSSKDTMHYCPSCGTLL 79
>AL032626-6|CAA21526.1| 132|Caenorhabditis elegans Hypothetical
protein Y37D8A.6 protein.
Length = 132
Score = 37.1 bits (82), Expect = 0.013
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 266 CPSCHAAIVTRVQHDASSKTHLFALILCLIGCWPCACIPYCMESCQNATHYCPNCNAYI 442
CP C+ + TRV+ + L L L +P C +C++ +++ H CPNC +
Sbjct: 71 CPRCNTNVCTRVERTMGFCSWTM-LFLGLFVFFPLLCC-FCLDGFKDSRHSCPNCGTIL 127
>AL032626-7|CAA21544.1| 79|Caenorhabditis elegans Hypothetical
protein Y37D8A.8 protein.
Length = 79
Score = 35.5 bits (78), Expect = 0.041
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +2
Query: 266 CPSCHAAIVTRVQHDASSKTHLFALILCLIGCWPCACIPYCMESCQNATHYCPNC 430
CP C +VT V+++ L +++ + + + C ++A H+CPNC
Sbjct: 17 CPRCRCTVVTVVEYEMGCFAWLIIILIIFVAFFLIYIL--CCIDIRDAIHHCPNC 69
>AL033510-7|CAA22069.1| 124|Caenorhabditis elegans Hypothetical
protein Y40H7A.11 protein.
Length = 124
Score = 34.7 bits (76), Expect = 0.071
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +2
Query: 266 CPSCHAAIVTRVQHDASSKTHLFA-LILCLIGCWPCACIPYCMESCQNATHYCPNCNAYI 442
C C + TRV+H L A L C C C ++A H+CPNC + +
Sbjct: 63 CTRCQTLVQTRVEHKIGIMWWLCATLSFCFFFC----CYLLFFPITKDAQHFCPNCGSLL 118
Query: 443 GTYT 454
T
Sbjct: 119 AVRT 122
>AF068714-9|AAC17810.1| 87|Caenorhabditis elegans Hypothetical
protein B0348.1 protein.
Length = 87
Score = 33.1 bits (72), Expect = 0.22
Identities = 16/61 (26%), Positives = 25/61 (40%)
Frame = +2
Query: 266 CPSCHAAIVTRVQHDASSKTHLFALILCLIGCWPCACIPYCMESCQNATHYCPNCNAYIG 445
CP C TR++ A + +P C C +S ++ HYCP+C +
Sbjct: 23 CPKCQCNHTTRME-SRRGNCWWIAFFIGFFLFFPI-CYWLCCQSSKDTLHYCPSCGTLLA 80
Query: 446 T 448
T
Sbjct: 81 T 81
>AL032626-23|CAE17974.1| 88|Caenorhabditis elegans Hypothetical
protein Y37D8A.26 protein.
Length = 88
Score = 32.3 bits (70), Expect = 0.38
Identities = 15/60 (25%), Positives = 24/60 (40%)
Frame = +2
Query: 266 CPSCHAAIVTRVQHDASSKTHLFALILCLIGCWPCACIPYCMESCQNATHYCPNCNAYIG 445
C +C + T+ + + I CL PC + + + H CPNCN +G
Sbjct: 27 CTNCQETVTTKTEQ-VFGMLNFALFITCLF--LPCFIVCFWCRCFMDVHHRCPNCNKSLG 83
>Z81464-6|CAB03856.2| 102|Caenorhabditis elegans Hypothetical
protein C08E8.1 protein.
Length = 102
Score = 31.9 bits (69), Expect = 0.50
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Frame = +2
Query: 251 TTSLT-CPSCHAAIVTRVQHDASSKTHLFAL--ILCLIGCWPCACIPY----CMESCQNA 409
T+ LT CP+C A +T V TH+ ++C G C C P+ C + ++
Sbjct: 30 TSFLTYCPTCEKAYMTSVN------THIGVCWWLICFFGTVLC-CFPFLFFLCCDVSKDV 82
Query: 410 THYCPNC 430
H CP+C
Sbjct: 83 NHNCPSC 89
>AC006610-4|AAK85450.1| 246|Caenorhabditis elegans Hypothetical
protein C30F12.4 protein.
Length = 246
Score = 31.9 bits (69), Expect = 0.50
Identities = 20/63 (31%), Positives = 24/63 (38%)
Frame = +2
Query: 257 SLTCPSCHAAIVTRVQHDASSKTHLFALILCLIGCWPCACIPYCMESCQNATHYCPNCNA 436
+L CP C I+ R Q D K L L +C C P C + C N C C
Sbjct: 172 ALVCPKCRKGIIMRKQ-DRLRKKILMCLAVC---CCPLTCCLPLICICCNYVDACGACGK 227
Query: 437 YIG 445
G
Sbjct: 228 KYG 230
>Z19156-1|CAA79563.1| 160|Caenorhabditis elegans Hypothetical
protein T02C1.1 protein.
Length = 160
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 347 CLIGCWPCACIPYCMESCQNATHYCPNCNAYIG 445
C+I C C +C+ES N CP C A+ G
Sbjct: 19 CIIECGHSYC-RFCIESHLNINEKCPLCRAHTG 50
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 269 PSCHAAIVTRVQHDASSKTHLFALILCLI--GCWPCACIPYCMESCQNATHY 418
PSC T V+ A + H+ A I L G W + +P C+E +N TH+
Sbjct: 190 PSCGGG-ETNVERAAKREAHVLARIAELRKNGLWSNSRLPKCVEPERNKTHW 240
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 269 PSCHAAIVTRVQHDASSKTHLFALILCLI--GCWPCACIPYCMESCQNATHY 418
PSC T V+ A + H+ A I L G W + +P C+E +N TH+
Sbjct: 190 PSCGGG-ETNVERAAKREAHVLARIAELRKNGLWSNSRLPKCVEPERNKTHW 240
>AL132862-5|CAB70227.1| 419|Caenorhabditis elegans Hypothetical
protein Y73F8A.9 protein.
Length = 419
Score = 29.1 bits (62), Expect = 3.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 374 CIPYCMESCQNATHYCPNCN 433
C P C +SCQN + P+ N
Sbjct: 82 CAPACQQSCQNQCQFAPSMN 101
>AL132862-4|CAB60533.1| 420|Caenorhabditis elegans Hypothetical
protein Y73F8A.8 protein.
Length = 420
Score = 29.1 bits (62), Expect = 3.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 374 CIPYCMESCQNATHYCPNCN 433
C P C +SCQN + P+ N
Sbjct: 83 CAPACQQSCQNQCQFAPSMN 102
>AF068721-4|AAC19260.1| 298|Caenorhabditis elegans Hypothetical
protein ZK1055.2 protein.
Length = 298
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -2
Query: 602 YCFFSN*GRIYCDTFNIKFTRE*TVEERYMYAN*NNVFLFICIYHKLINLY 450
YC+FS R YC N +F V+ + A+ + F C+ K++ L+
Sbjct: 4 YCYFSETVRCYCKIHNYEFVL--AVDTDFKCAHKDKFFRRHCVSAKILPLF 52
>AF026214-3|AAB71312.2| 493|Caenorhabditis elegans Amino acid
transporter protein 3 protein.
Length = 493
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +1
Query: 496 LFQLAYIYLSSTVYSLVNFILNVSQYI 576
L L Y+ LS+ +YSL+N+I VS +I
Sbjct: 365 LLSLLYLLLSNNIYSLINYI-QVSYWI 390
>Z29443-11|CAK55173.1| 367|Caenorhabditis elegans Hypothetical
protein T07C4.11 protein.
Length = 367
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Frame = +2
Query: 362 WPC----ACIPYCMESCQNATHYCPNCNAYI 442
W C +C P+ + C +T +C C+A+I
Sbjct: 325 WQCISSPSCHPHILSICSCSTTFCSKCSAFI 355
>U41109-13|AAB37036.1| 264|Caenorhabditis elegans Posterior
segregation protein 1 protein.
Length = 264
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 645 YNKLFCDKFSNTGMSYYSTIC 707
Y + CDKFS TG Y T C
Sbjct: 142 YKTVLCDKFSMTGNCKYGTRC 162
>AY255666-1|AAQ96603.1| 164|Caenorhabditis elegans MPS-3 protein.
Length = 164
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 379 PLLHGKLSKCYSLLSELQRLHWNLYKL 459
PL+H LS Y L +++ HW Y++
Sbjct: 110 PLVHIALSTAYQLFTQIVISHWKTYQI 136
>AF099925-9|AAC69500.1| 150|Caenorhabditis elegans Hypothetical
protein K01A2.9 protein.
Length = 150
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 379 PLLHGKLSKCYSLLSELQRLHWNLYKL 459
PL+H LS Y L +++ HW Y++
Sbjct: 96 PLVHIALSTAYQLFTQIVISHWKTYQI 122
>AF099925-7|AAO38626.1| 115|Caenorhabditis elegans Mirp k channel
accessory subunitprotein 2, isoform c protein.
Length = 115
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 379 PLLHGKLSKCYSLLSELQRLHWNLYKL 459
PL+H LS Y L +++ HW Y++
Sbjct: 61 PLVHIALSTAYQLFTQIVISHWKTYQI 87
>AF099925-6|AAC69501.1| 159|Caenorhabditis elegans Mirp k channel
accessory subunitprotein 2, isoform a protein.
Length = 159
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 379 PLLHGKLSKCYSLLSELQRLHWNLYKL 459
PL+H LS Y L +++ HW Y++
Sbjct: 105 PLVHIALSTAYQLFTQIVISHWKTYQI 131
>AF099925-5|AAZ94292.1| 164|Caenorhabditis elegans Mirp k channel
accessory subunitprotein 2, isoform d protein.
Length = 164
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 379 PLLHGKLSKCYSLLSELQRLHWNLYKL 459
PL+H LS Y L +++ HW Y++
Sbjct: 110 PLVHIALSTAYQLFTQIVISHWKTYQI 136
>AB006208-1|BAA33854.1| 264|Caenorhabditis elegans cytoplasmic
zinc-finger protein protein.
Length = 264
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 645 YNKLFCDKFSNTGMSYYSTIC 707
Y + CDKFS TG Y T C
Sbjct: 142 YKTVLCDKFSMTGNCKYGTRC 162
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,939,094
Number of Sequences: 27780
Number of extensions: 365978
Number of successful extensions: 1192
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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