Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20879
         (861 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13610.1 68417.m02118 DNA (cytosine-5-)-methyltransferase, pu...    29   3.0  
At4g37750.1 68417.m05344 ovule development protein aintegumenta ...    29   5.3  
At4g26970.1 68417.m03881 aconitate hydratase, cytoplasmic, putat...    29   5.3  

>At4g13610.1 68417.m02118 DNA (cytosine-5-)-methyltransferase,
           putative similar to cytosine-5 methyltransferase (METII)
           [Arabidopsis thaliana] GI:6523846; contains Pfam
           profiles PF01426: BAH domain, PF00145: C-5
           cytosine-specific DNA methylase
          Length = 1404

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = -1

Query: 696 PSQYIEKCPLK---GSKLRWRHSTKW 628
           P +YI++CP      SK++ RH TKW
Sbjct: 457 PDEYIKRCPFVTGLASKMQDRHHTKW 482


>At4g37750.1 68417.m05344 ovule development protein aintegumenta
           (ANT) identical to ovule development protein
           aintegumenta (ANT) (GI:1244708) ) [Arabidopsis thaliana]
          Length = 555

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = +3

Query: 21  YQPSTSKASDFYGLNFQQTKESXFKDVPSSSKNFNLETEPKQKLNKDE 164
           +Q S+ K  DF+G +   T      D+   S  +N   EP    N  E
Sbjct: 109 HQDSSPKVEDFFGTHHNNTSHKEAMDLSLDSLFYNTTHEPNTTTNFQE 156


>At4g26970.1 68417.m03881 aconitate hydratase, cytoplasmic, putative
           / citrate hydro-lyase/aconitase, putative strong
           similarity to SP|P49608 Aconitate hydratase, cytoplasmic
           (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase)
           {Cucurbita maxima}; contains Pfam profiles PF00330:
           Aconitase family (aconitate hydratase), PF00694:
           Aconitase C-terminal domain
          Length = 995

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -2

Query: 641 IVPSGNILKTAP*ANFIFDR 582
           I P+GNI KT+P A F+ DR
Sbjct: 781 ISPAGNIQKTSPAAKFLMDR 800


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,971,322
Number of Sequences: 28952
Number of extensions: 297953
Number of successful extensions: 609
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)