Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20878
(609 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 100 2e-21
SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_50935| Best HMM Match : TPR_2 (HMM E-Value=0.00065) 29 3.9
SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_44616| Best HMM Match : rve (HMM E-Value=0.012) 28 5.1
SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7) 28 5.1
SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82) 28 6.8
SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_29064| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07) 28 6.8
SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30) 28 6.8
SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08) 27 9.0
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 99.5 bits (237), Expect = 2e-21
Identities = 44/80 (55%), Positives = 61/80 (76%)
Frame = +1
Query: 16 MKQIVANQKVKIPDGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFG 195
MK I+A++ V IPD + V VKSR+VTV GPRG LKRNF+HL +++ V ++V+ WF
Sbjct: 557 MKTILASETVTIPDNVEVKVKSRVVTVTGPRGTLKRNFRHLRLELTKVGKDKVRVDVWFA 616
Query: 196 SKKELAAVRTVCSHVENMIK 255
S+KELA V+T+ +H+ENMIK
Sbjct: 617 SRKELACVKTIITHIENMIK 636
Score = 76.2 bits (179), Expect = 2e-14
Identities = 31/48 (64%), Positives = 39/48 (81%)
Frame = +3
Query: 255 GVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAP 398
GV G++YKMRAVYAHFPIN E +++E+RNFLGEKY+RRV+M P
Sbjct: 637 GVIYGYRYKMRAVYAHFPINIAIQENGTLVEVRNFLGEKYVRRVRMRP 684
>SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 34
Score = 44.8 bits (101), Expect = 6e-05
Identities = 19/21 (90%), Positives = 21/21 (100%)
Frame = +2
Query: 509 KNKDIRKFLDGLYVSEKTTVV 571
KNKDIRKFLDG+YVSEKTT+V
Sbjct: 11 KNKDIRKFLDGVYVSEKTTIV 31
>SB_50935| Best HMM Match : TPR_2 (HMM E-Value=0.00065)
Length = 1033
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 416 LSKTKG*TNH*RQLFGRCL*LCCSHSAIYYSKNKDIRKFLDGLYVSE 556
+ TK T +QLF R L + + +Y+S K +R+ L GL +++
Sbjct: 948 VKNTKDATREAKQLFQRSLDIRTAKLGVYHSATKTVRRELMGLEMAD 994
>SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1256
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 429 KDELIIEGNSLEDVSSSAALIQQSTTVRIRISESSWMVFMYLRKQ 563
K++ + EGNS +D L+Q T IRI +W + LR +
Sbjct: 956 KEQQVFEGNSDQDTVVINDLVQPLLTQHIRICPKTWNEQIALRAE 1000
>SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 177 LQETRVYHANVNSQVFEVPFENSAGPFNCHQ 85
L TR+ + V+S EV E S P++CHQ
Sbjct: 160 LYNTRIPNVTVSSDGGEVELEISDDPYDCHQ 190
>SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -2
Query: 230 QTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCLKFLLRTPRGPLTVT 87
QT++T A F D RRR F+ +S C + L R+P P++ T
Sbjct: 85 QTMITTA--FPDTRKSPLTRRRNFSDGVSDLSCTENLARSPCAPVSPT 130
>SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 335 ITLSGDTVNGEVSIHSTHLVLEAFSYSLIMFS 240
+T+ D G VS H+THLV A S + + F+
Sbjct: 173 LTIHTDHEGGNVSAHTTHLVGSALSDAYLSFA 204
>SB_44616| Best HMM Match : rve (HMM E-Value=0.012)
Length = 1189
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = +1
Query: 46 KIPDGLTVHVKSRLVTVKGPRG---VLKRNFKHL-AVDIRMVNPRLLKV 180
K+ DGL VH+ ++ V K P+ + KR + L A+ I + +P + KV
Sbjct: 4 KLDDGLRVHIVTQYVLFKNPKKLEIIAKRQKETLEALQINLDHPHVAKV 52
>SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7)
Length = 197
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 7/44 (15%)
Frame = -1
Query: 168 TRVYHANVNSQVFEVP-------FENSAGPFNCHQTRFHMDRKP 58
TR YH NV VF V F S G N HQ + DR+P
Sbjct: 57 TRSYHENVVRPVFGVSDYWYRYEFAKSRGQINRHQLSWREDRQP 100
>SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82)
Length = 883
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 1 KQSPNMKQIVANQKVKIPDGLTVHVKSRLVTVKGPRG 111
+ + +K++ + K K DG+ VH K+ TV+ PRG
Sbjct: 99 QNAKRIKKLEEDLKKKTCDGVLVHRKAVAATVEEPRG 135
>SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1427
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +3
Query: 30 SKSESQNPRRAYGPCEIASGDS*RAPRS--SQKELQTL 137
S+ ++ R Y PC I SG++ APR +KE++ L
Sbjct: 1363 SEDDTTTGARRYRPCPIESGNTYEAPRQVVMEKEVEEL 1400
>SB_29064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 324
Score = 27.9 bits (59), Expect = 6.8
Identities = 20/77 (25%), Positives = 38/77 (49%)
Frame = -3
Query: 562 CFLRYIKTIQELSDILILTVVDC*MRAAELETSSKELPSMISSSFCFGELTTVTPGAIFT 383
C++R + +++ + + + + AAE++TS L + S S C VT IFT
Sbjct: 212 CYIRIWRYLRQHREQMAQSAIS----AAEVKTSRIFLLVINSFSICLAPFMIVTFIEIFT 267
Query: 382 LLMYFSPKKLRISIIEL 332
MY P+++ ++ L
Sbjct: 268 GTMYTVPRQVYLATTNL 284
>SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07)
Length = 309
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 454 LPSMISSSFCFGELTTVTPGAIFTLLMYFSPKKLRISIIE 335
+P I S G+L +T G I T PKKL +IE
Sbjct: 218 IPIAIGSKVNLGQLNILTAGPIITANTSGDPKKLANQVIE 257
>SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)
Length = 1152
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 73 VKSRLVTVKGPRGVLKRNFKHL 138
V++R TV PRG L+RN +HL
Sbjct: 1069 VETRSYTVSTPRGELRRNRRHL 1090
>SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08)
Length = 428
Score = 27.5 bits (58), Expect = 9.0
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -2
Query: 299 SIHSTHLVL--EAFSYSLIMFSTCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCLK 126
S+ S HL L + + Y L + + C L +SFL P+H + R GF + A +
Sbjct: 185 SVISFHLTLSRKPYYYLLYILTPCSVLCLLTLTSFLIPSH--SGERIGFITTLLLAMTVY 242
Query: 125 FLL 117
LL
Sbjct: 243 LLL 245
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,195,263
Number of Sequences: 59808
Number of extensions: 391962
Number of successful extensions: 1027
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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