Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20876
         (751 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40494| Best HMM Match : fn3 (HMM E-Value=9.2e-21)                   31   1.3  
SB_56074| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_52941| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033)                   29   3.0  
SB_20502| Best HMM Match : Ank (HMM E-Value=4.2)                       29   3.0  
SB_56995| Best HMM Match : TFIIB (HMM E-Value=0.0059)                  29   3.0  
SB_27384| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_35566| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_57980| Best HMM Match : Ribosomal_L20 (HMM E-Value=2.2)             29   5.3  
SB_8318| Best HMM Match : OTU (HMM E-Value=7.4e-19)                    29   5.3  
SB_30311| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_9920| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.0  
SB_52275| Best HMM Match : CTF_NFI (HMM E-Value=0.86)                  28   9.3  
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_40494| Best HMM Match : fn3 (HMM E-Value=9.2e-21)
          Length = 600

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 337 VKKGGRYQMQVELCNSDGCSSSEGVEIVVADTDGSH 444
           V  G  YQ+ V+ CNS GC  S     V  D  G +
Sbjct: 275 VLPGTTYQISVQACNSAGCGESSRAVNVTTDKKGDN 310


>SB_56074| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 387

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = -3

Query: 578 RYRDAVHRELSRIHTPFDEVSAHPFPEV-CLKGLFFSPIE*SRGLKWLPSVSATTISTPS 402
           RY    ++  +R H     + A P+P +  ++ L + PI+  R L W P  S   +  P 
Sbjct: 86  RYHGHQYKVFARYHGHQYSIRALPWPPIQSVRALPWPPIQSVRALPWPPIQSIRALPWPP 145

Query: 401 LELHPSELQSST 366
           ++   + + ++T
Sbjct: 146 IQCSRATMATNT 157


>SB_52941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 772

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/61 (24%), Positives = 25/61 (40%)
 Frame = +2

Query: 143 ERTFAIVEVNQAATAYNQLVTKKDAADVSVNWNVWTGARPTSPESCSMGRKSGAVPAAPH 322
           +RT A  +V + A++Y   +  +    +           P SPES     ++   P  PH
Sbjct: 51  QRTTAQRDVKEDASSYRSAIEIQTLCRIQTRSQTMAARNPESPESTPRRNETIETPRTPH 110

Query: 323 Q 325
           Q
Sbjct: 111 Q 111


>SB_38582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1438

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/75 (26%), Positives = 31/75 (41%)
 Frame = -2

Query: 246 HTFQLTETSAASFLVTSWL*AVAAWLTSTIANVRSPQPRFGIPGGPQEPTANAATAKTSA 67
           H +  T+T+AA+    + + A+ A  T+T     +              T   ATA T  
Sbjct: 19  HHYATTKTTAATIKTKTTIIAITAITTTTTTTTTTTTTTTTTTTTTTTTTTTTATATTKT 78

Query: 66  IIRCPITGSTKKANK 22
           I    +T +T  ANK
Sbjct: 79  ITITTVTITTAVANK 93


>SB_23120| Best HMM Match : Mucin (HMM E-Value=0.033)
          Length = 382

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/75 (26%), Positives = 31/75 (41%)
 Frame = -2

Query: 246 HTFQLTETSAASFLVTSWL*AVAAWLTSTIANVRSPQPRFGIPGGPQEPTANAATAKTSA 67
           H +  T+T+AA+    + + A+ A  T+T     +              T   ATA T  
Sbjct: 141 HHYATTKTTAATIKTKTTIIAITAITTTTTTTTTTTTTTTTTTTTTTTTTTTTATATTKT 200

Query: 66  IIRCPITGSTKKANK 22
           I    +T +T  ANK
Sbjct: 201 ITITTVTITTAVANK 215


>SB_20502| Best HMM Match : Ank (HMM E-Value=4.2)
          Length = 396

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 23/93 (24%), Positives = 33/93 (35%)
 Frame = +1

Query: 298 WSSAGSATSAAFKVKKGGRYQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSIGEK 477
           W + G     A +    GR+   V +    G   S+ VE  + D DG H   L+Y   E 
Sbjct: 126 WGAGG--LGRALRCAVSGRHLETVRMLRGAGAKISD-VEYDIEDPDGDHWEWLEYLDSEM 182

Query: 478 NKPFKQTSGKGWALTSSNGVCILESSLWTASRY 576
            +  K    +   +    G C        A RY
Sbjct: 183 ERAGKYGDVRAVRMCCELGACSFFEPATGAVRY 215


>SB_56995| Best HMM Match : TFIIB (HMM E-Value=0.0059)
          Length = 657

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 23/93 (24%), Positives = 34/93 (36%)
 Frame = +1

Query: 298 WSSAGSATSAAFKVKKGGRYQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSIGEK 477
           W + G     A +    GR+   V +    G   S+ VE  + D DG H   L+Y   E 
Sbjct: 479 WGAGG--LGRALRCAVFGRHLETVRMLRGVGAKISD-VEYDIEDPDGDHWEWLEYLDSEM 535

Query: 478 NKPFKQTSGKGWALTSSNGVCILESSLWTASRY 576
            +  K    +   +    G C        A+RY
Sbjct: 536 ERAGKYGDVRAVRMCCELGACSFFEPATEAARY 568


>SB_27384| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1032

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 23/93 (24%), Positives = 33/93 (35%)
 Frame = +1

Query: 298  WSSAGSATSAAFKVKKGGRYQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSIGEK 477
            W + G     A +    GR+   V +    G   S+ VE  + D DG H   L+Y   E 
Sbjct: 793  WGAGG--LGRALRCAVSGRHLETVRMLRGAGAKISD-VEYDIEDPDGDHWEWLEYLDSEM 849

Query: 478  NKPFKQTSGKGWALTSSNGVCILESSLWTASRY 576
             +  K    +   +    G C        A RY
Sbjct: 850  ERAGKYGDVRAVRMCCELGACSFFEPATGAVRY 882


>SB_35566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 520

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 25/97 (25%), Positives = 41/97 (42%)
 Frame = -2

Query: 483 FIFLTNRIIERPQMATISIGYYDFDALARAASV*VAELDLHLVSSTLLHFESG*CGAAGT 304
           F FL  R+  +  + T  I Y   DA   A    V   D + V+ T L          G 
Sbjct: 323 FKFLYERLWFKQNICTADIKY-GIDAEPAARDAYVKATD-NTVTETGLWINKM-YPHLGA 379

Query: 303 APDFLPIEQDSGLVGRAPVHTFQLTETSAASFLVTSW 193
           +PD L ++++SG  G   +   +L +T     +++ W
Sbjct: 380 SPDGLVVDKESGTAGILEIKCLKLLKTRTVEEVISGW 416


>SB_57980| Best HMM Match : Ribosomal_L20 (HMM E-Value=2.2)
          Length = 472

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 22/92 (23%), Positives = 45/92 (48%)
 Frame = -1

Query: 427 RLLRFRRPR*SCIRLSCRARPASGIFHPSSL*KRLMWRCRHCSRLPSHRAGFWTCRPRAG 248
           RLLR+R+ R    ++  +  P S +F+  +      W+ ++ +RL S  + F+  R    
Sbjct: 207 RLLRYRKLRKRHKKMIIKGTPVSSVFYRIAT-NYNYWKLKYINRLNSFYSSFF--RATCK 263

Query: 247 PHVPVDGDVSGVLLGHELVVSCGRLVDFDDRE 152
             V  +G    +LL  ++ ++ G + D ++ E
Sbjct: 264 TSVRYNGCKQTLLLSGDIELNPGPVTDNNNIE 295


>SB_8318| Best HMM Match : OTU (HMM E-Value=7.4e-19)
          Length = 728

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 22/92 (23%), Positives = 45/92 (48%)
 Frame = -1

Query: 427 RLLRFRRPR*SCIRLSCRARPASGIFHPSSL*KRLMWRCRHCSRLPSHRAGFWTCRPRAG 248
           RLLR+R+ R    ++  +  P S +F+  +      W+ ++ +RL S  + F+  R    
Sbjct: 422 RLLRYRKLRKRHKKMIIKGTPVSSVFYRIAT-NYNYWKLKYINRLNSFYSSFF--RATCK 478

Query: 247 PHVPVDGDVSGVLLGHELVVSCGRLVDFDDRE 152
             V  +G    +LL  ++ ++ G + D ++ E
Sbjct: 479 TSVRYNGCKQTLLLSGDIELNPGPVTDNNNIE 510


>SB_30311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 107 CGPPGIPNLGWGERTFAIVEVN 172
           C   GIP+  WGER  AIV +N
Sbjct: 141 CAVLGIPDPEWGERVAAIVALN 162


>SB_9920| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 601

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = -2

Query: 309 GTAPDFLPIEQDSGLVGRAPVHTFQLTETSAASFLVTSW 193
           G +PD L ++++SG  G   +   +L +T     +++ W
Sbjct: 459 GASPDGLVVDKESGTAGILEIKCLKLLKTRTVEEVISGW 497


>SB_52275| Best HMM Match : CTF_NFI (HMM E-Value=0.86)
          Length = 809

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 275 SCSMGRKSGAVPAAPHQPLSK*RRVEDTRCRSSSATQTDAALA 403
           SC  GR S  VP APH+ ++    + +T  R+S    T+   A
Sbjct: 232 SCDGGRLS--VPGAPHEAMANGVSISNTSVRTSENNNTNDGFA 272


>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 235

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 23/82 (28%), Positives = 35/82 (42%)
 Frame = -2

Query: 285 IEQDSGLVGRAPVHTFQLTETSAASFLVTSWL*AVAAWLTSTIANVRSPQPRFGIPGGPQ 106
           +  DSG   +  V     +   A   +VT WL AV  WL + +  +++    F +  G  
Sbjct: 144 VGSDSGKTSKKVVIADSASVLQAFDAVVT-WLDAVVTWLDAVVTWLQNADSPFVVVSG-- 200

Query: 105 EPTANAATAKTSAIIRCPITGS 40
             T+   T K S  I+ P  GS
Sbjct: 201 -VTSADPTRKCSQKIKNPKNGS 221


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,316,327
Number of Sequences: 59808
Number of extensions: 491181
Number of successful extensions: 1360
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1359
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)