Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20873
         (726 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    26   1.4  
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    23   9.6  

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +3

Query: 282  TKGVVQLFNAVRNQQKSIEKEMDRNDLSEGKKEKILKKFDKRTFLD 419
            +K  V++  + RN QKS +K     D  E  +  I K  D+RT L+
Sbjct: 917  SKLTVEIKTSERNVQKSKDKINSMEDEVEAAQSAIRKGNDERTQLE 962


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 597 VETLFHSSTDSLSQSFILAPIIK 529
           + T FH++ DSL  S +LA + K
Sbjct: 612 IYTDFHAAFDSLPHSLLLAKLSK 634


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 610,700
Number of Sequences: 2352
Number of extensions: 11225
Number of successful extensions: 19
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74012934
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)