Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20872
         (622 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri...   132   1e-31
At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri...   130   7e-31
At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protei...    34   0.066
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si...    29   3.3  
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi...    28   4.3  
At1g43730.1 68414.m05028 hypothetical protein                          28   4.3  
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim...    28   5.7  
At5g01850.1 68418.m00104 protein kinase, putative similar to pro...    28   5.7  
At5g41310.1 68418.m05020 kinesin motor protein-related                 27   7.6  
At5g28615.1 68418.m03493 hypothetical protein                          27   7.6  

>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
           ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
          Length = 198

 Score =  132 bits (320), Expect = 1e-31
 Identities = 63/84 (75%), Positives = 74/84 (88%)
 Frame = +1

Query: 256 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRK 435
           R+ R G+LDE Q KLDYVL L +E+FLERRLQT VFK+G+AKSIHH+R+LIRQRHIRV K
Sbjct: 81  RMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVLIRQRHIRVGK 140

Query: 436 QVVNIPSFIVRLDSGKHIDFSLKS 507
           Q+VNIPSF+VRLDS KHIDF+L S
Sbjct: 141 QLVNIPSFMVRLDSQKHIDFALTS 164



 Score =  114 bits (274), Expect = 5e-26
 Identities = 49/70 (70%), Positives = 62/70 (88%)
 Frame = +2

Query: 44  FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 223
           + KT+  PRRP+EK RLD ELK++GEYGLRNKRE+WRV+Y+L+RIR AAR+LLTL+EK P
Sbjct: 10  YGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSP 69

Query: 224 KRLFEGNALL 253
           +R+FEG ALL
Sbjct: 70  RRIFEGEALL 79



 Score = 31.9 bits (69), Expect = 0.35
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +3

Query: 510 FGGGRPGRVKRKN 548
           FGGGRPGRVKR+N
Sbjct: 166 FGGGRPGRVKRRN 178


>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
           ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
          Length = 197

 Score =  130 bits (314), Expect = 7e-31
 Identities = 61/84 (72%), Positives = 74/84 (88%)
 Frame = +1

Query: 256 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRK 435
           R+ R G+LDE Q KLDYVL L +E+FLERRLQT VFK+G+AKSIHHAR+LIRQRHIRV +
Sbjct: 81  RMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHARVLIRQRHIRVGR 140

Query: 436 QVVNIPSFIVRLDSGKHIDFSLKS 507
           Q+VNIPSF+VR++S KH+DFSL S
Sbjct: 141 QLVNIPSFMVRVESQKHVDFSLTS 164



 Score =  117 bits (282), Expect = 5e-27
 Identities = 54/79 (68%), Positives = 66/79 (83%)
 Frame = +2

Query: 17  MVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARE 196
           MVN R    + KT+  PRRP+EK RLD ELK++GEYGLR KRE+WRV+YTL+RIR AARE
Sbjct: 1   MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARE 60

Query: 197 LLTLEEKDPKRLFEGNALL 253
           LLTL+EK+P+R+FEG ALL
Sbjct: 61  LLTLDEKNPRRIFEGEALL 79



 Score = 32.7 bits (71), Expect = 0.20
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +3

Query: 510 FGGGRPGRVKRKNLR 554
           FGGGRPGRVKR+N R
Sbjct: 166 FGGGRPGRVKRRNER 180


>At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protein
           40S RIBOSOMAL PROTEINs - different species
          Length = 182

 Score = 34.3 bits (75), Expect = 0.066
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = +1

Query: 256 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRK 435
           +L  +GV+  ++  L     L +  F  RRL T +     A+    A   I Q H+RV  
Sbjct: 80  KLYNMGVIPTRK-SLTLTERLSVSSFCRRRLSTVLVHLKFAEHHKEAVTYIEQGHVRVGP 138

Query: 436 QVVNIPSFIV 465
           + +  P+F+V
Sbjct: 139 ETITDPAFLV 148


>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
           similar to chloroplast membrane protein (ALBINO3)
           (GI:3927828) [Arabidopsis thaliana]
          Length = 1013

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +2

Query: 50  KTYVTPRR-PFEKARLDQ-ELKIIGEYGLRNKREVWRVKYT 166
           K ++ PRR P  +    Q E K   EYG RN  E W +  T
Sbjct: 479 KYFIKPRRHPESECSATQTEYKFTSEYGKRNSSECWAMTTT 519


>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
           similarity to unknown protein (ref|NP_005638.1)
          Length = 613

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 288 TDETRLCAWSED*GLLGASSADAGVQSW 371
           T E   CAWS    LL + S DA  + W
Sbjct: 265 TSEVCACAWSPSASLLASGSGDATARIW 292


>At1g43730.1 68414.m05028 hypothetical protein
          Length = 320

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 406 SKFWHDGWTSPGQL 365
           +KFWHD WT  G L
Sbjct: 77  AKFWHDNWTGHGPL 90


>At5g41240.1 68418.m05011 glutathione S-transferase, putative
           similar to glutathione S-transferase, GST 10b
           GB:CAA10662 [Arabidopsis thaliana] 37349.
          Length = 591

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 253 TRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQ 357
           +RL  + VLDE++  +D  LG+K     ER++ T+
Sbjct: 472 SRLENLWVLDEEEQVMDLPLGVKSSKQKERKVATK 506


>At5g01850.1 68418.m00104 protein kinase, putative similar to
           protein kinase [Arabidopsis thaliana]
           gi|1054633|emb|CAA63387; contains protein kinase domain,
           Pfam:PF00069
          Length = 333

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = -2

Query: 507 RFQREVNVLARVQAHN 460
           RF REVN+++RVQ HN
Sbjct: 62  RFVREVNMMSRVQHHN 77


>At5g41310.1 68418.m05020 kinesin motor protein-related 
          Length = 961

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +2

Query: 350 RRRCSKLAWRSPSIMPEF*SGKGIFVSASKL*TSHH 457
           RRR S  A  S  +   F  G   F+ AS++ TSHH
Sbjct: 141 RRRWSLPADHSKGVDSNFNDGGSQFIEASEINTSHH 176


>At5g28615.1 68418.m03493 hypothetical protein
          Length = 149

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 406 SKFWHDGWTSPGQL 365
           +KFWHD WT  G L
Sbjct: 9   AKFWHDDWTGLGPL 22


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,039,469
Number of Sequences: 28952
Number of extensions: 269859
Number of successful extensions: 731
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)