Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20870
         (755 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    24   1.1  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   2.6  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   8.0  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   8.0  

>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 288 EWEYTSNITKENEEKSIQ 341
           +WEY +N  KEN  K +Q
Sbjct: 144 DWEYPANADKENFVKLLQ 161


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 275 GQLSRMGVHLEYHEGER 325
           G+ S +  HL +H GER
Sbjct: 327 GKTSHLKAHLRWHTGER 343


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 91  KTSLMLFFCWFEF 53
           KTS  L+ CW EF
Sbjct: 225 KTSGSLYTCWSEF 237


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/33 (30%), Positives = 11/33 (33%)
 Frame = +2

Query: 455 TRRCGSARR*IPSFDENCSGMESNYATAKICSY 553
           T  C       P F   C G  S+ A  K   Y
Sbjct: 7   TAGCNPDSELFPGFGSTCGGSSSSMAYLKSAPY 39


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,781
Number of Sequences: 336
Number of extensions: 2987
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20234955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)