Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20870
(755 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31634| Best HMM Match : Peptidase_M2 (HMM E-Value=0) 57 1e-08
SB_29362| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 4e-06
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0) 49 4e-06
SB_49475| Best HMM Match : Syntaxin (HMM E-Value=8.5) 48 8e-06
SB_10611| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_54542| Best HMM Match : Ribosomal_60s (HMM E-Value=0.39) 30 1.8
SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24) 29 3.1
SB_27384| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_25547| Best HMM Match : Metallothionein (HMM E-Value=4.6) 28 7.1
SB_27890| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
>SB_31634| Best HMM Match : Peptidase_M2 (HMM E-Value=0)
Length = 663
Score = 57.2 bits (132), Expect = 1e-08
Identities = 30/87 (34%), Positives = 48/87 (55%)
Frame = +2
Query: 494 FDENCSGMESNYATAKICSYKNESKCDLSLEPEITEIFSTSQDPEELKHAWVEWHNAAGA 673
+ + S M Y++AK+ + + +LSL P++TE+ + S++ EL AW +W G
Sbjct: 118 YSQRESEMTEIYSSAKVTNPAIGT--NLSLNPQLTELMANSRNSPELLAAWRDWRQVTGP 175
Query: 674 TAKKNFTDYVNLYNEAAKLNGFDNVAE 754
+ F D V L N+ AK NGF N+ E
Sbjct: 176 KMRPLFKDCVTLANQGAKDNGFQNMYE 202
>SB_29362| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 50.4 bits (115), Expect = 2e-06
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Frame = +2
Query: 515 MESNYATAKICSYKNESKCDLSLEPEITEIFSTSQDPEELKHAWVEWHNAAGATAKKNFT 694
M+ Y + K+ + SK LSL+P + +I S S+D E LK W W +A G + +
Sbjct: 124 MDQIYGSGKVID-TDGSK--LSLDPHLYKILSNSRDYERLKFVWKGWRDATGPELRPLYK 180
Query: 695 DYVNLYNEAAKLNGF-DN 745
+V L N+ AK NG+ DN
Sbjct: 181 QFVELANKGAKENGWADN 198
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +3
Query: 273 RASLAEWEYTSNITKENEEKSIQTHLELSRQEKAAWEETKMYGWQDFQDFTLRRM 437
++S A W Y +N+T EN K Q L S + A ++ K + + T R++
Sbjct: 45 KSSEASWNYATNLTVENLNKRTQASLTYSAFLEEARKKAKKFDLTKLSNDTRRQI 99
>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1049
Score = 49.2 bits (112), Expect = 4e-06
Identities = 22/76 (28%), Positives = 40/76 (52%)
Frame = +2
Query: 509 SGMESNYATAKICSYKNESKCDLSLEPEITEIFSTSQDPEELKHAWVEWHNAAGATAKKN 688
+ M Y+T K+C + +SL+P++ + S S++ +EL AW W +A +
Sbjct: 257 TNMTEIYSTGKVCLNITRNNTCMSLDPDLGNLMSRSRNQDELVWAWRGWRDAVAPPVRGM 316
Query: 689 FTDYVNLYNEAAKLNG 736
F V+L N+ A+ +G
Sbjct: 317 FQQMVDLLNKGARQHG 332
>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 657
Score = 49.2 bits (112), Expect = 4e-06
Identities = 22/76 (28%), Positives = 40/76 (52%)
Frame = +2
Query: 509 SGMESNYATAKICSYKNESKCDLSLEPEITEIFSTSQDPEELKHAWVEWHNAAGATAKKN 688
+ M Y+T K+C + +SL+P++ + S S++ +EL AW W +A +
Sbjct: 541 TNMTEIYSTGKVCLNITRNNTCMSLDPDLGNLMSRSRNQDELVWAWRGWRDAVAPPVRGM 600
Query: 689 FTDYVNLYNEAAKLNG 736
F V+L N+ A+ +G
Sbjct: 601 FQQMVDLLNKGARQHG 616
>SB_49475| Best HMM Match : Syntaxin (HMM E-Value=8.5)
Length = 200
Score = 48.0 bits (109), Expect = 8e-06
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Frame = +2
Query: 509 SGMESNYATAKICSYKNESKCDLSLEPEITEIFSTSQDPEELKHAWVEWHNAAGATAKKN 688
S M+ Y++ K+ E LSL P++ +I + S+D E L W W +A G +
Sbjct: 123 SQMDKIYSSGKVKDANGEM---LSLNPDLYKILAESRDYERLLFVWKGWRDAVGPAIRPL 179
Query: 689 FTDYVNLYNEAAKLNGF-DN 745
+ +V++ N+ AK NG+ DN
Sbjct: 180 YQQFVDISNKGAKENGWKDN 199
>SB_10611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1134
Score = 31.5 bits (68), Expect = 0.76
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Frame = +2
Query: 491 SFDENCSGMESNYATAKICSYKNESKCDLSLEPEITEIFSTSQDPEELKHAWVEWHNAAG 670
+F ++ S NYA + + D +LE + + + Q + W G
Sbjct: 764 NFTKDPSANAMNYAKMTAAVAAEKERHDKALE-KYQQDYGRYQQRRQKILDWQAQSRERG 822
Query: 671 ATAKKNFTDY-VNLYNEAA 724
+ AK+NFTDY + LYN+ +
Sbjct: 823 SLAKQNFTDYALKLYNQTS 841
>SB_54542| Best HMM Match : Ribosomal_60s (HMM E-Value=0.39)
Length = 1037
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +2
Query: 536 AKICSYKNESKCDLSLEPEITEIFSTSQDPEELKHAWVEWHNAAGATAKKNFTDY-VNLY 712
+++ S E + D +LE + + + Q + W G+ AK+NFTDY + LY
Sbjct: 933 SRLLSMDREGRHDKALE-KYQQDYERYQQRRQKILDWQAQSRERGSLAKQNFTDYALKLY 991
Query: 713 NEAA 724
N+ +
Sbjct: 992 NQTS 995
>SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24)
Length = 429
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 545 CSYKNESKCDLSLEPEITEIFSTSQD-PEELKHAWVEWHNAAG 670
CS K+ S CDL +P+ + + TSQ+ P+ + W + G
Sbjct: 179 CSDKDTSACDLRTKPQSSTVCGTSQECPKWIIGNWSQCSRTCG 221
>SB_27384| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1032
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = -2
Query: 559 ILVRADLRSGVVRFHSRTVLIKAWNLSSGRAATPS*LYFLNILRNVKSWKSCHPYILVSS 380
++V+ LRS V R V++ W L A+TPS +YF N R+ + + Y + S+
Sbjct: 133 VVVKHPLRSRVRRLSVARVVVGIWCLGLV-ASTPSTIYFTNQHRSHREQRMLSCYQVTSA 191
Query: 379 Q 377
+
Sbjct: 192 E 192
>SB_25547| Best HMM Match : Metallothionein (HMM E-Value=4.6)
Length = 110
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 500 ENCSGMESNYATAKICSYKNESKCD 574
ENC G + Y + ICS K CD
Sbjct: 17 ENCKGEDMRYDESGICSLKCHDACD 41
>SB_27890| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 520
Score = 27.9 bits (59), Expect = 9.4
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Frame = +3
Query: 504 TVLEWNR----TTPLRRSARTR-MRVNVIYLWNLR*LKYSPRAKTLRS*SMPG 647
T + W R PLR + R R RV ++ W L L SP T+R M G
Sbjct: 284 TAIAWERFFAIVYPLRMTTRIRNSRVTIVIAWFLSALVTSPSLYTMRVIKMDG 336
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,653,559
Number of Sequences: 59808
Number of extensions: 379791
Number of successful extensions: 1394
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1394
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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