Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20869
         (810 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57676| Best HMM Match : No HMM Matches (HMM E-Value=.)              73   3e-13
SB_41793| Best HMM Match : Ribosomal_L23 (HMM E-Value=1.9e-17)         46   5e-05
SB_39921| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_14328| Best HMM Match : F-box (HMM E-Value=6.6e-09)                 29   4.5  
SB_10378| Best HMM Match : TSGP1 (HMM E-Value=2)                       29   4.5  
SB_30603| Best HMM Match : PKD_channel (HMM E-Value=1.2e-15)           29   5.9  
SB_52395| Best HMM Match : TP2 (HMM E-Value=7.8)                       29   5.9  
SB_43651| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  

>SB_57676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 275

 Score = 72.9 bits (171), Expect = 3e-13
 Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
 Frame = +1

Query: 508 VVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNILKF-LSV*SSN 684
           V KG    + +K+R SV F RPKT    R+PKYPR S P+ N++D Y I+K  L+  S+ 
Sbjct: 146 VQKGVRAAKTKKVRTSVKFHRPKTLSLRRNPKYPRTSAPRINKLDHYAIIKHPLTTESAM 205

Query: 685 EED*R*QHLGLYCSHKCKQAPYQGCSKKLYDINVAKVNTLIR 810
           ++      L      +  +   +   KKLYDI V+KVNTL+R
Sbjct: 206 KKIEDNNTLVFIVDVRANKPQIKAAVKKLYDIVVSKVNTLVR 247


>SB_41793| Best HMM Match : Ribosomal_L23 (HMM E-Value=1.9e-17)
          Length = 71

 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 22/28 (78%), Positives = 23/28 (82%)
 Frame = +2

Query: 683 MKKIEDNNTLVFIVHTSANKHHIKAAVR 766
           MKKIEDNNTLVFIV   ANK  IKAAV+
Sbjct: 1   MKKIEDNNTLVFIVDVRANKPQIKAAVK 28



 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +1

Query: 763 KKLYDINVAKVNTLIR 810
           KKLYDI V+KVNTL+R
Sbjct: 28  KKLYDIVVSKVNTLVR 43


>SB_39921| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 17  TGTCPESSCACPEISCACPETSCACPESS 103
           T   P+++ A PE + A PE + A PE++
Sbjct: 39  TTAAPDATTAAPEATTAAPEATTAAPEAT 67


>SB_14328| Best HMM Match : F-box (HMM E-Value=6.6e-09)
          Length = 425

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 662 NLRML*ASMRFLLGRDFLGYLGCLGGSNVLGLRKCTELR 546
           NLR L  S   L+  +FL  +    G  VL +RKC  +R
Sbjct: 208 NLRSLDTSQCLLVKDNFLSIIASCRGLEVLSMRKCISVR 246


>SB_10378| Best HMM Match : TSGP1 (HMM E-Value=2)
          Length = 114

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 529 KRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAY 648
           K+ RK +     R+PK  + PR PK P+K   ++N+   +
Sbjct: 68  KKPRKPKKPKKPRKPKKPKKPRKPKKPKKGKWRKNKQGGH 107


>SB_30603| Best HMM Match : PKD_channel (HMM E-Value=1.2e-15)
          Length = 1029

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
 Frame = -1

Query: 798 VDFSNIYIIEFLTAALIWCLFALV*TIKTKVLLSSIFF---IAASD*EEFKDVVGIHAIS 628
           + F N+  + +LT++++  +  ++ T   KVLL++IFF   +   D  EF+  +   A  
Sbjct: 471 MQFKNVKSLSWLTSSIVSFIQDVLITQPLKVLLTAIFFALVVKKPDKGEFE--IPSEAAQ 528

Query: 627 LRQRLPWVFRVPRRFKRLG 571
           L +   W++      K  G
Sbjct: 529 LAEDEEWLYSAANNNKNAG 547


>SB_52395| Best HMM Match : TP2 (HMM E-Value=7.8)
          Length = 149

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 559 HFRRPKTFEPPRHPKYPRKSLPKRN 633
           H   P+ F PP+H   PRK  P +N
Sbjct: 66  HRALPRKFWPPKHRALPRKFWPSKN 90


>SB_43651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 274

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 11  QNTGTCPESSCACPEISCACPETSCACPESS 103
           +   T PE + A PE +   PE +  CPE +
Sbjct: 84  EGNSTSPEGNSASPEGNSTSPEGNSTCPEGN 114


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,885,980
Number of Sequences: 59808
Number of extensions: 263612
Number of successful extensions: 966
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)