Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20868
         (852 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)                   124   7e-29
SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)             105   5e-23
SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)             104   8e-23
SB_35139| Best HMM Match : No HMM Matches (HMM E-Value=.)              64   1e-10
SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.90 
SB_49729| Best HMM Match : Vps54 (HMM E-Value=3.7)                     30   2.1  
SB_58571| Best HMM Match : PLAT (HMM E-Value=1.2e-22)                  29   6.3  
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_41164| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_38812| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_37636| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_17596| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_13940| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_13248| Best HMM Match : SCP (HMM E-Value=2.6e-21)                   28   8.4  
SB_36630| Best HMM Match : DUF1312 (HMM E-Value=0.67)                  28   8.4  

>SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)
          Length = 265

 Score =  124 bits (300), Expect = 7e-29
 Identities = 56/85 (65%), Positives = 70/85 (82%)
 Frame = +3

Query: 255 VLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFI 434
           V+  S DS ++HLAW N PRK+GG+G +NIP++SD + +IS+DYGVL E+ G+  RGLFI
Sbjct: 118 VIACSVDSEYSHLAWTNVPRKKGGIGNINIPILSDLTKQISKDYGVLLEDQGVALRGLFI 177

Query: 435 IDDKQNLRQITINDLPVGRSVEETL 509
           IDDK  LRQITINDLPVGRSV+ETL
Sbjct: 178 IDDKGILRQITINDLPVGRSVDETL 202



 Score =  107 bits (257), Expect = 1e-23
 Identities = 51/79 (64%), Positives = 61/79 (77%), Gaps = 4/79 (5%)
 Frame = +1

Query: 31  KVFSFNKMPLQMT---KPAPQFKATAV-VNGEFKDISLSDYKGKYVVLFFYPLDFTFVCP 198
           ++ SF++  +  T   KPAP F  TAV  +GEF D+ LSDYKGKYVVLFFYPLDFTFVCP
Sbjct: 39  RMMSFSRADMSKTAIQKPAPAFSGTAVNKHGEFIDLKLSDYKGKYVVLFFYPLDFTFVCP 98

Query: 199 TEIIAFSEKADEFRKIGCE 255
           TEIIAFS++ DEF+ I CE
Sbjct: 99  TEIIAFSDRVDEFKAINCE 117



 Score = 58.0 bits (134), Expect = 9e-09
 Identities = 23/26 (88%), Positives = 24/26 (92%)
 Frame = +2

Query: 509 RLVQAFQFTDKHGEVCPANWRPGAKT 586
           RL+QAFQFTDKHGEVCPA WRPGA T
Sbjct: 203 RLIQAFQFTDKHGEVCPAGWRPGADT 228


>SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score =  105 bits (252), Expect = 5e-23
 Identities = 45/65 (69%), Positives = 57/65 (87%)
 Frame = +1

Query: 61  QMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFR 240
           Q++KPAP ++ TAVVNGEFK++ LSD++GKY+V FFYPLDFTFVCPTEIIAFS++ +EFR
Sbjct: 55  QISKPAPFWEGTAVVNGEFKELKLSDFEGKYLVFFFYPLDFTFVCPTEIIAFSDRIEEFR 114

Query: 241 KIGCE 255
            I  E
Sbjct: 115 AINTE 119



 Score = 53.2 bits (122), Expect = 3e-07
 Identities = 25/29 (86%), Positives = 27/29 (93%)
 Frame = +3

Query: 423 GLFIIDDKQNLRQITINDLPVGRSVEETL 509
           GLFIIDDK  LRQIT+NDLPVGRSV+ETL
Sbjct: 135 GLFIIDDKGVLRQITMNDLPVGRSVDETL 163



 Score = 28.3 bits (60), Expect = 8.4
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +3

Query: 255 VLGASTDSHFTHLAW 299
           V+G S DS FTHLAW
Sbjct: 120 VVGCSVDSVFTHLAW 134



 Score = 28.3 bits (60), Expect = 8.4
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = +2

Query: 509 RLVQAFQFTDKH 544
           RLVQAFQ+TDKH
Sbjct: 164 RLVQAFQYTDKH 175


>SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)
          Length = 704

 Score =  104 bits (250), Expect = 8e-23
 Identities = 48/69 (69%), Positives = 59/69 (85%)
 Frame = +3

Query: 303 NTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQITINDLP 482
           N PRK+GG+G +NIP++SD + +IS+DYGVL E+ G+  RGLFIIDDK  LRQITINDLP
Sbjct: 3   NVPRKKGGIGNINIPILSDLTKQISKDYGVLLEDQGVALRGLFIIDDKGILRQITINDLP 62

Query: 483 VGRSVEETL 509
           VGRSV+ETL
Sbjct: 63  VGRSVDETL 71



 Score = 58.0 bits (134), Expect = 9e-09
 Identities = 23/26 (88%), Positives = 24/26 (92%)
 Frame = +2

Query: 509 RLVQAFQFTDKHGEVCPANWRPGAKT 586
           RL+QAFQFTDKHGEVCPA WRPGA T
Sbjct: 72  RLIQAFQFTDKHGEVCPAGWRPGADT 97


>SB_35139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 26/38 (68%), Positives = 30/38 (78%)
 Frame = +2

Query: 509 RLVQAFQFTDKHGEVCPANWRPGAKTIKPDTKAAQEYF 622
           RLVQAFQ+TDKHGEVCPA W+PG  TI PD    ++YF
Sbjct: 10  RLVQAFQYTDKHGEVCPAGWKPGKDTIIPDPTQKKKYF 47


>SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1755

 Score = 31.5 bits (68), Expect = 0.90
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = +2

Query: 311 AQAGRTRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQADHDQRPARG 487
           + AG     +    +R+ A H PR+   G G+ HS+P  +      +P     + P +G
Sbjct: 18  SSAGEESLADSGEGRRENARHKPRVMIGGEGEKHSVPAVITIPSVTDPGVAEGRPPRKG 76


>SB_49729| Best HMM Match : Vps54 (HMM E-Value=3.7)
          Length = 353

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +2

Query: 335 HEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQADHDQRPARGEVG 496
           H+  + K  + P LP  ++  R   + L   LH     EP A   + P R E G
Sbjct: 151 HKWRNLKEVLVPSLPERQTGQRNRTNKLLMNLHRVTSPEPPATRPKHPGRVEAG 204


>SB_58571| Best HMM Match : PLAT (HMM E-Value=1.2e-22)
          Length = 651

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +3

Query: 174 FGLHVRVPDGDHRVLGEGGRVPQDRLRVLGASTDSHFTHLAWINTPRKQGG 326
           +   + +  G H+  G   RV    ++++G+ +DSH T L   N PR Q G
Sbjct: 461 YSYEISIHTGFHQGCGTTARV---YIQLIGSISDSHTTELRDANRPRFQRG 508


>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3293

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 18/61 (29%), Positives = 24/61 (39%)
 Frame = +2

Query: 302 QHAAQAGRTRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQADHDQRPA 481
           QH+     T P + SS  +Q  PH P  R   R        T H+   + PQ+      A
Sbjct: 784 QHSESVSETSP-QLSSTAQQTPPHSPATRHNARTSSPQSLATRHNAWTSSPQSPATLHNA 842

Query: 482 R 484
           R
Sbjct: 843 R 843


>SB_41164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 341 HSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQADHDQRPARGE 490
           HSS K+ +     RLRSA  G+  ++P+T     Q  P   H + P+ G+
Sbjct: 38  HSSKKKGLVK-TKRLRSASVGEAQNMPKTT--AGQLRPSRRHLKAPSTGK 84


>SB_38812| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +3

Query: 138 LQGEICCAVLLSFGLHVRVPDGDHRVLGEGGRVPQDRLRVLGASTDSHFTH 290
           L+ ++    L    +H   P+ D  V  +GGR+P+ +L       D ++ H
Sbjct: 20  LERKVTVIRLAESKIHNHKPEHDIDVHSQGGRLPKTKLHASKEQMDDYYRH 70


>SB_37636| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 17/57 (29%), Positives = 21/57 (36%)
 Frame = +2

Query: 314 QAGRTRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQADHDQRPAR 484
           Q GR RP++H      V  H PR R   R    S P +   R        H  +  R
Sbjct: 147 QTGRMRPYDHQRRGCIVRNHRPRDRQQSRRTARSPPHSTTDREDGTLAERHAPQAPR 203


>SB_17596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 19/68 (27%), Positives = 24/68 (35%)
 Frame = +2

Query: 314 QAGRTRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQADHDQRPARGEV 493
           + GR RP++H      V  H PR R   R    S P +   R        H  +  R   
Sbjct: 43  KTGRMRPYDHQRRGCIVRNHRPRDRQQSRRTARSPPHSTTDREDGTLAERHAPQAPRSGP 102

Query: 494 GGGDPRLV 517
           G    R V
Sbjct: 103 GHDKRRTV 110


>SB_13940| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 19/68 (27%), Positives = 24/68 (35%)
 Frame = +2

Query: 314 QAGRTRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQADHDQRPARGEV 493
           + GR RP++H      V  H PR R   R    S P +   R        H  +  R   
Sbjct: 43  KTGRMRPYDHQRRGCIVRNHRPRDRQQSRRTARSPPHSTTDREDGTLAERHAPQAPRSGP 102

Query: 494 GGGDPRLV 517
           G    R V
Sbjct: 103 GHDKRRTV 110


>SB_13248| Best HMM Match : SCP (HMM E-Value=2.6e-21)
          Length = 631

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 471 NDLPVGRSVEETLGWCRPSSSRTST 545
           N  PV R   +T GWC+P S    T
Sbjct: 74  NKSPVIRKCRKTCGWCKPPSPEKQT 98


>SB_36630| Best HMM Match : DUF1312 (HMM E-Value=0.67)
          Length = 241

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +3

Query: 138 LQGEICCAVLLSFGLHVRVPDGDHRVLGEGGRVPQDRLRVLGASTDSHFTH 290
           L+ ++    L    +H   P+ D  V  +GGR+P+ +L       D ++ H
Sbjct: 167 LERKVTVIRLAESKIHNHKPEHDIDVHSQGGRLPKTKLHASKEQMDDYYRH 217


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,999,722
Number of Sequences: 59808
Number of extensions: 463887
Number of successful extensions: 1618
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1616
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)