Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20868
(852 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11630.1 68416.m01425 2-cys peroxiredoxin, chloroplast (BAS1)... 102 3e-22
At5g06290.1 68418.m00705 2-cys peroxiredoxin, chloroplast, putat... 101 6e-22
At3g26060.1 68416.m03245 peroxiredoxin Q, putative similar to pe... 49 5e-06
At1g48130.1 68414.m05371 peroxiredoxin (PER1) / rehydrin, putati... 36 0.026
At3g06050.1 68416.m00692 alkyl hydroperoxide reductase/thiol spe... 32 0.56
At5g57370.1 68418.m07168 expressed protein low similarity to nuc... 31 1.3
At5g61850.1 68418.m07760 floral meristem identity control protei... 30 1.7
At2g16970.1 68415.m01955 expressed protein ; expression support... 29 5.2
At1g80910.1 68414.m09493 expressed protein 29 5.2
At3g62170.1 68416.m06985 pectinesterase family protein contains ... 28 6.9
At5g09840.1 68418.m01138 expressed protein contains Pfam profile... 28 9.1
At4g16146.1 68417.m02449 expressed protein 28 9.1
At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2) ... 28 9.1
>At3g11630.1 68416.m01425 2-cys peroxiredoxin, chloroplast (BAS1)
identical to SP|Q96291 2-cys peroxiredoxin BAS1,
chloroplast precursor {Arabidopsis thaliana}; contains
Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide
reductase and thiol-specific antioxidant) family
Length = 266
Score = 102 bits (245), Expect = 3e-22
Identities = 48/85 (56%), Positives = 62/85 (72%)
Frame = +3
Query: 255 VLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFI 434
VLG S DS F+HLAW+ T RK GGLG +N PLISD + IS+ +GVL + GI RGLFI
Sbjct: 140 VLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLISDVTKSISKSFGVLIHDQGIALRGLFI 199
Query: 435 IDDKQNLRQITINDLPVGRSVEETL 509
ID + ++ TIN+L +GRSV+ET+
Sbjct: 200 IDKEGVIQHSTINNLGIGRSVDETM 224
Score = 84.2 bits (199), Expect = 1e-16
Identities = 42/69 (60%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Frame = +1
Query: 52 MPLQMTKPAPQFKATAVVNGEFKDISLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSEKA 228
+PL K AP F+A AV + EF + LSDY GK YV+LFFYPLDFTFVCPTEI AFS++
Sbjct: 72 LPLVGNK-APDFEAEAVFDQEFIKVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRH 130
Query: 229 DEFRKIGCE 255
EF K+ E
Sbjct: 131 SEFEKLNTE 139
Score = 49.6 bits (113), Expect = 3e-06
Identities = 20/39 (51%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Frame = +2
Query: 509 RLVQAFQFTDKH-GEVCPANWRPGAKTIKPDTKAAQEYF 622
R +QA Q+ ++ EVCPA W+PG K++KPD K ++EYF
Sbjct: 225 RTLQALQYIQENPDEVCPAGWKPGEKSMKPDPKLSKEYF 263
>At5g06290.1 68418.m00705 2-cys peroxiredoxin, chloroplast, putative
very strong similarity to SP|Q96291 2-cys peroxiredoxin
BAS1, chloroplast precursor {Arabidopsis thaliana};
contains Pfam profile: PF00578 AhpC/TSA (alkyl
hydroperoxide reductase and thiol-specific antioxidant)
family
Length = 273
Score = 101 bits (242), Expect = 6e-22
Identities = 47/85 (55%), Positives = 62/85 (72%)
Frame = +3
Query: 255 VLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFI 434
VLG S DS F+HLAW+ T RK GGLG +N PL+SD + IS+ +GVL + GI RGLFI
Sbjct: 147 VLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLVSDITKSISKSFGVLIPDQGIALRGLFI 206
Query: 435 IDDKQNLRQITINDLPVGRSVEETL 509
ID + ++ TIN+L +GRSV+ET+
Sbjct: 207 IDKEGVIQHSTINNLGIGRSVDETM 231
Score = 83.4 bits (197), Expect = 2e-16
Identities = 41/69 (59%), Positives = 51/69 (73%), Gaps = 1/69 (1%)
Frame = +1
Query: 52 MPLQMTKPAPQFKATAVVNGEFKDISLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSEKA 228
+PL K AP F+A AV + EF + LS+Y GK YV+LFFYPLDFTFVCPTEI AFS++
Sbjct: 79 LPLVGNK-APDFEAEAVFDQEFIKVKLSEYIGKKYVILFFYPLDFTFVCPTEITAFSDRY 137
Query: 229 DEFRKIGCE 255
+EF K+ E
Sbjct: 138 EEFEKLNTE 146
Score = 50.0 bits (114), Expect = 2e-06
Identities = 20/39 (51%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Frame = +2
Query: 509 RLVQAFQFTDKH-GEVCPANWRPGAKTIKPDTKAAQEYF 622
R +QA Q+ ++ EVCPA W+PG K++KPD K ++EYF
Sbjct: 232 RTLQALQYVQENPDEVCPAGWKPGEKSMKPDPKLSKEYF 270
>At3g26060.1 68416.m03245 peroxiredoxin Q, putative similar to
peroxiredoxin Q [Sedum lineare] GI:6899842; contains
Pfam profile: PF00578 AhpC/TSA (alkyl hydroperoxide
reductase and thiol-specific antioxidant) family
Length = 216
Score = 48.8 bits (111), Expect = 5e-06
Identities = 22/46 (47%), Positives = 29/46 (63%)
Frame = +1
Query: 118 KDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCE 255
K +SL YKGK VVL+FYP D T C + AF + ++F+K G E
Sbjct: 86 KPVSLKKYKGKPVVLYFYPADETPGCTKQACAFRDSYEKFKKAGAE 131
Score = 31.1 bits (67), Expect = 0.97
Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +3
Query: 255 VLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETG-IPFRGLF 431
V+G S D +H A+ + + + L+SD+ +++ +D+GV + G +P R +
Sbjct: 132 VIGISGDDSASHKAFASKYK-------LPYTLLSDEGNKVRKDWGVPGDLFGALPGRQTY 184
Query: 432 IIDDKQNLRQITINDLPVGRSVEETL 509
++D ++ I N + ++ETL
Sbjct: 185 VLDKNGVVQLIYNNQFQPEKHIDETL 210
>At1g48130.1 68414.m05371 peroxiredoxin (PER1) / rehydrin, putative
identical to peroxiredoxin (Rehydrin homolog)
[Arabidopsis thaliana] SWISS-PROT:O04005; contains Pfam
profile: PF00578 AhpC/TSA (alkyl hydroperoxide reductase
and thiol-specific antioxidant) family
Length = 216
Score = 36.3 bits (80), Expect = 0.026
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 130 LSDY-KGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIG 249
L DY + VLF +P DFT VC TE+ A ++ A EF K G
Sbjct: 24 LHDYFANSWTVLFSHPGDFTPVCTTELGAMAKYAHEFDKRG 64
Score = 36.3 bits (80), Expect = 0.026
Identities = 21/87 (24%), Positives = 38/87 (43%)
Frame = +3
Query: 249 LRVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGL 428
+++LG S D +H WI +N P+I+D + I ++D P R L
Sbjct: 65 VKLLGLSCDDVQSHKDWIKDIEAFNHGSKVNYPIIADPNKEIIPQLNMIDPIENGPSRAL 124
Query: 429 FIIDDKQNLRQITINDLPVGRSVEETL 509
I+ ++ + GR+++E L
Sbjct: 125 HIVGPDSKIKLSFLYPSTTGRNMDEVL 151
>At3g06050.1 68416.m00692 alkyl hydroperoxide reductase/thiol
specific antioxidant (AhpC/TSA)/mal allergen family
protein identical to SP|Q9M7T0 Putative peroxiredoxin,
mitochondrial precursor {Arabidopsis thaliana}; similar
to thioredoxin peroxidase [Capsicum annuum] GI:18654477;
contains Pfam profile: PF00578 AhpC/TSA (alkyl
hydroperoxide reductase and thiol-specific antioxidant)
family
Length = 201
Score = 31.9 bits (69), Expect = 0.56
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +1
Query: 103 VNGEFKDISLSD-YKGKYVVLFFYPLDFTFVCPTE-IIAFSEKADEFRKIGCE 255
V+ +F LSD +KGK VV+F P +T VC + + ++ D+F+ G +
Sbjct: 58 VSSKFSTTPLSDIFKGKKVVIFGLPGAYTGVCSQQHVPSYKSHIDKFKAKGID 110
>At5g57370.1 68418.m07168 expressed protein low similarity to
nucleic acid binding protein [Homo sapiens] GI:431953
Length = 219
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +2
Query: 323 RTRPHEHSSDKRQV-APHLPRLRSAGRGDGHSLPRTLHHRRQA-EPQADHDQRPARGEV 493
R+R +H + R V +P R RS R HHRR++ P A +RP +G V
Sbjct: 54 RSRTPDHHARARHVRSPERYRSRSRSIDRDRDRDRQRHHRRRSPSPDAPSRKRPRQGSV 112
>At5g61850.1 68418.m07760 floral meristem identity control protein
LEAFY (LFY) identical to PIR|B38104 LFY floral meristem
identity control protein, splice form 2 - Arabidopsis
thaliana; contains Pfam profile PF01698: Floricaula /
Leafy protein
Length = 420
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/65 (29%), Positives = 24/65 (36%)
Frame = +2
Query: 308 AAQAGRTRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQADHDQRPARG 487
A +A R R E ++ HL + G H+L EP DQ A G
Sbjct: 110 AVRAERRRLQEEEEEESSRRRHLLLSAAGDSGTHHALDALSQEGLSEEPVQQQDQTDAAG 169
Query: 488 EVGGG 502
GGG
Sbjct: 170 NNGGG 174
>At2g16970.1 68415.m01955 expressed protein ; expression supported
by MPSS
Length = 414
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = -1
Query: 657 IVGVVSCLVASPKYSWAALVSGLMVLAPGLQLAGHTSPCLSVNWKA 520
I+G +S L PK + + VL+ GL + + CLSV+W A
Sbjct: 258 IIGSISQLFILPKL--VSAIGERRVLSTGLLMDSVNAACLSVSWSA 301
>At1g80910.1 68414.m09493 expressed protein
Length = 497
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +1
Query: 121 DISLSDYKGKYV--VLFFYPLDFTFVCPTEIIAFSEKADEFRKI 246
D+ ++G+ + +LFFYP D TF +I SE F ++
Sbjct: 19 DLRRGQHEGQELDKILFFYPPDLTFSTQLSVIGLSEGLITFTRL 62
>At3g62170.1 68416.m06985 pectinesterase family protein contains
Pfam profiles: PF01095 pectinesterase, PF04043 plant
invertase/pectin methylesterase inhibitor ;similar to
pollen-specific pectin esterase GI:1620652 from
[Brassica rapa subsp. pekinensis]
Length = 588
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 156 NIFPLVVRQRNVLELSVDDGRGLELGSGFGHLQRHLVETKD 34
+IF VV + + VDD + + +G+G G R L+E D
Sbjct: 192 DIFHSVVTAMAQMGVKVDDMKNITMGAGAGGAARRLLEDND 232
>At5g09840.1 68418.m01138 expressed protein contains Pfam profile
PF04396: Protein of unknown function, DUF537
Length = 924
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -1
Query: 741 IISFFFQFLNILHFQRCALFEIVYSIRVIVGVVSCLVASPKYSWAALVSG 592
+IS +F ++LH R + I+ + + V C AS + W AL+ G
Sbjct: 170 LISSDKEFASVLHRLRMNNYNILLASKSSAPGVLCSAASIMWDWDALIKG 219
>At4g16146.1 68417.m02449 expressed protein
Length = 102
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +3
Query: 315 KQGGLGPMNIPLISDKSHRI---SRDYGVLDEETGIPFRGLFIID 440
K GGL P PLIS S R S D+ +L +E I R + I+
Sbjct: 25 KYGGLVPKKKPLISKDSKRAFFDSADWALLKQEASIDQRTIAAIE 69
>At3g57670.1 68416.m06425 zinc finger (C2H2 type) protein (WIP2)
identical to WIP2 protein [Arabidopsis thaliana]
gi|18027012|gb|AAL55722; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 383
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 413 SLPRTLHHRRQAEPQADHDQRPARGEVGGGD 505
S RT HH + D D + G VGGG+
Sbjct: 149 SSSRTTHHHEDMNHKKDLDHEYSHGAVGGGE 179
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,944,425
Number of Sequences: 28952
Number of extensions: 317486
Number of successful extensions: 1067
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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