Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20867
(704 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54473| Best HMM Match : DLIC (HMM E-Value=0) 101 8e-22
SB_55554| Best HMM Match : AAA (HMM E-Value=0.022) 36 0.032
SB_37511| Best HMM Match : ABC_tran (HMM E-Value=0) 32 0.39
SB_51094| Best HMM Match : VWA (HMM E-Value=0) 32 0.39
SB_56043| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.52
SB_27093| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.69
SB_20094| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_27355| Best HMM Match : ABC_tran (HMM E-Value=1.1e-37) 29 3.7
SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0) 29 3.7
SB_114| Best HMM Match : Ribosomal_L30_N (HMM E-Value=2.5) 29 3.7
SB_12855| Best HMM Match : TPR_2 (HMM E-Value=2.3e-12) 29 4.9
SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0) 29 4.9
SB_47339| Best HMM Match : Rubredoxin (HMM E-Value=0.76) 28 6.4
SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_4906| Best HMM Match : Trypsin (HMM E-Value=0) 28 6.4
SB_56256| Best HMM Match : Ras (HMM E-Value=8.9e-31) 28 8.5
SB_22546| Best HMM Match : ABC_tran (HMM E-Value=0) 28 8.5
SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_54473| Best HMM Match : DLIC (HMM E-Value=0)
Length = 1401
Score = 101 bits (241), Expect = 8e-22
Identities = 43/78 (55%), Positives = 64/78 (82%), Gaps = 1/78 (1%)
Frame = +2
Query: 23 LWSAILEEVQNQGNTKLPSNKNVLVLGDNETGKTTLVAKLQGVEDP-KKGSALEYAYIDV 199
LWS+IL +VQ+ + KLPS+K+++++G++E+GKTTL++KL+G ED KG LEY Y++V
Sbjct: 843 LWSSILSDVQSSASRKLPSHKSIILIGNDESGKTTLISKLRGKEDDISKGHGLEYTYLEV 902
Query: 200 RDEYRDDHTRLSVWVLDG 253
DE DD+TRL+VW+LDG
Sbjct: 903 HDEEIDDYTRLNVWILDG 920
Score = 61.3 bits (142), Expect = 7e-10
Identities = 26/74 (35%), Positives = 47/74 (63%)
Frame = +1
Query: 256 PGHTNLLKFALSEETFPHTLVILTVAMTTPWGILDQLQSWASVLGDHIDKLNLTPEHRLQ 435
P + +LLK+AL+ + LV++ V + PW I++ L SW +L +HI L L+P+ +
Sbjct: 922 PRNKSLLKYALTPKHARDVLVVMVVDCSRPWAIMESLHSWTEILREHIHSLKLSPKELNE 981
Query: 436 SKKQQVQKWQRYTE 477
+++ VQ++Q YT+
Sbjct: 982 MEEKIVQQFQDYTD 995
>SB_55554| Best HMM Match : AAA (HMM E-Value=0.022)
Length = 1681
Score = 35.9 bits (79), Expect = 0.032
Identities = 17/26 (65%), Positives = 20/26 (76%)
Frame = +2
Query: 71 LPSNKNVLVLGDNETGKTTLVAKLQG 148
L SNKNV+VLGD +GKTTL+ L G
Sbjct: 264 LQSNKNVVVLGDAGSGKTTLLHALSG 289
>SB_37511| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 884
Score = 32.3 bits (70), Expect = 0.39
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 95 VLGDNETGKTTLVAKLQGVEDPKKGSALEY 184
+LG N GK+TL+ L G+ P G+AL Y
Sbjct: 527 LLGHNGAGKSTLIGALTGMIQPSSGTALIY 556
>SB_51094| Best HMM Match : VWA (HMM E-Value=0)
Length = 3544
Score = 32.3 bits (70), Expect = 0.39
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +2
Query: 11 GKDNLWSAIL--EEVQNQGNTKLPSNKNVLVLGDNETGKTTLVAK 139
G NL A+ +++ N NT+ S K V+++ DN +GKT V K
Sbjct: 2329 GNSNLEEALTNAKKILNTPNTRKSSRKAVVIITDNTSGKTPTVLK 2373
>SB_56043| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 31.9 bits (69), Expect = 0.52
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +2
Query: 71 LPSNKNVLVLGDNETGKTTLVAKLQGVEDPKKGSALEYAYIDVRD 205
+P+ K V ++G + +GK+T+V L DP+ G L A D+RD
Sbjct: 434 IPAGKKVAIVGGSGSGKSTIVRLLFRFFDPQGGRVL-VAGQDIRD 477
>SB_27093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 683
Score = 31.5 bits (68), Expect = 0.69
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +2
Query: 77 SNKNVLVLGDNETGKTTLVAKLQGVEDPKKG 169
+ + V+GDN +GKTTL+ L G +P KG
Sbjct: 363 NESRIAVVGDNGSGKTTLLKILLGELEPVKG 393
>SB_20094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 62 NTKLPSNKNVLVLGDNETGKTTLVAKLQGVEDPKKGSAL 178
N +P+ K ++G + +GKTTL+ L +P +G L
Sbjct: 245 NMTIPAKKITAIVGTSGSGKTTLMKLLLKFYEPSEGDVL 283
>SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2190
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -1
Query: 449 CCFLLCNLCSGVKFNLSIWSPSTEAQLWSWSSIPH 345
C + ++ SG N++ WS S SW ++PH
Sbjct: 747 CAYTDTDVPSGAPSNITTWSQSPTDMSISWEALPH 781
>SB_27355| Best HMM Match : ABC_tran (HMM E-Value=1.1e-37)
Length = 226
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/46 (39%), Positives = 28/46 (60%)
Frame = +2
Query: 95 VLGDNETGKTTLVAKLQGVEDPKKGSALEYAYIDVRDEYRDDHTRL 232
++G+N GKTTL+ L G +P G+ ++Y + D D Y D T+L
Sbjct: 6 LVGENGNGKTTLLRSLCGELNPTSGT-IKY-HFDYEDGY-DLKTKL 48
>SB_7365| Best HMM Match : ABC_membrane (HMM E-Value=0)
Length = 1301
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/45 (28%), Positives = 27/45 (60%)
Frame = +2
Query: 44 EVQNQGNTKLPSNKNVLVLGDNETGKTTLVAKLQGVEDPKKGSAL 178
+V N + + S + V ++G++ GK+T++ +Q DP+ GS +
Sbjct: 668 KVLNGLSLTVRSGQTVALVGESGCGKSTVIKLIQRFYDPENGSRI 712
>SB_114| Best HMM Match : Ribosomal_L30_N (HMM E-Value=2.5)
Length = 318
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = +2
Query: 11 GKDNLWSAILEEVQNQGNTKLPSNKNVLVLGDNETGKTTLVAK 139
GKD+ +A L N G L SN+N L+ G N T VA+
Sbjct: 89 GKDDTATAFLVSFLNIGRGVLSSNENFLLFGANCAENCTPVAR 131
>SB_12855| Best HMM Match : TPR_2 (HMM E-Value=2.3e-12)
Length = 567
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +2
Query: 581 EAVLTTNLGLDIV--VVVTKTDYMSTLEKEHDYRDEHFD 691
+ +LTTNLG+D V T YM + DY D +D
Sbjct: 86 QKLLTTNLGVDDEDKYVSTPVRYMQNAQYHKDYNDNDYD 124
>SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 3369
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 95 VLGDNETGKTTLVAKLQGVEDPKKGSAL 178
+LG N GKTT ++ L G+ P GSA+
Sbjct: 232 LLGHNGAGKTTTMSILTGLFTPTSGSAM 259
>SB_47339| Best HMM Match : Rubredoxin (HMM E-Value=0.76)
Length = 730
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = -1
Query: 446 CFLLCNLCSGVKFNLSIWSPSTEAQLWSWSSIP 348
C LC C V +L + P + Q W W P
Sbjct: 281 CDGLCRSCGVVGCSLPVVGPDDQVQPWDWRDCP 313
>SB_23698| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/33 (33%), Positives = 14/33 (42%)
Frame = -1
Query: 446 CFLLCNLCSGVKFNLSIWSPSTEAQLWSWSSIP 348
C LC C V +L + P + Q W W P
Sbjct: 519 CDGLCRSCGVVGCSLPVVGPDDQVQPWDWRDCP 551
>SB_4906| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 530
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 179 EYAYIDVRDEYRDDHTRLSVWVLD-GVQVTLIYSSLR 286
+YAYID R +Y+ D RL D GVQ Y +R
Sbjct: 68 KYAYIDARYQYKGDKARLEFTGPDLGVQCMDFYFYMR 104
>SB_56256| Best HMM Match : Ras (HMM E-Value=8.9e-31)
Length = 506
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/72 (23%), Positives = 33/72 (45%)
Frame = +2
Query: 38 LEEVQNQGNTKLPSNKNVLVLGDNETGKTTLVAKLQGVEDPKKGSALEYAYIDVRDEYRD 217
+ E + G ++P V+++GD+E GKT L+ + +K A + + E
Sbjct: 222 IRETRPNGQIRIP----VILVGDSECGKTALLNAYVRNQFNEKYEATVFNSLSTAVEVDG 277
Query: 218 DHTRLSVWVLDG 253
+ L++W G
Sbjct: 278 ERIELTLWDTSG 289
>SB_22546| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 844
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +2
Query: 77 SNKNVLVLGDNETGKTTLVAKLQGVEDPKKGSALEYAYIDVR 202
S + V ++G++ GK+TL+ +Q DP +G+ ID+R
Sbjct: 144 SGQTVALVGESGCGKSTLIKLVQRFYDPAEGTVCMDG-IDIR 184
>SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 564
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 89 VLVLGDNETGKTTLVAKLQGVEDP 160
+++LG+N TGKTT + L G P
Sbjct: 348 IVMLGENGTGKTTFIRMLAGKLSP 371
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,175,996
Number of Sequences: 59808
Number of extensions: 439200
Number of successful extensions: 1269
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1266
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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