Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20865
(792 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37) 121 8e-28
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0) 32 0.46
SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059) 30 2.5
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59) 30 2.5
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_31022| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0) 29 4.3
SB_33909| Best HMM Match : FH2 (HMM E-Value=0) 29 5.7
SB_47997| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10) 28 7.5
SB_48995| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
Length = 261
Score = 121 bits (291), Expect = 8e-28
Identities = 55/82 (67%), Positives = 69/82 (84%)
Frame = +3
Query: 3 FVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKI 182
FVFT+ DL +VR ++ENKV APA+ G IAP+ V +PA NTGLGPEKTSFFQAL+IPTKI
Sbjct: 70 FVFTKEDLADVRKIIMENKVAAPAKAGVIAPIDVFVPAGNTGLGPEKTSFFQALAIPTKI 129
Query: 183 SKGTIEIINDVHILKPGDKVGA 248
++GTIEIINDVH++K +K+ A
Sbjct: 130 ARGTIEIINDVHLIKKDEKLKA 151
>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
Length = 870
Score = 32.3 bits (70), Expect = 0.46
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = -2
Query: 212 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGNDD*QWG 90
I+D NS + R K+LEERG L+ +GV GG + ++G
Sbjct: 144 IIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGGEEGARYG 184
>SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)
Length = 765
Score = 29.9 bits (64), Expect = 2.5
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = +1
Query: 10 SPAETSLRSVTNCWRTKSRLQLVPVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQR 189
S + TS ++ WR K L + L SS P +TPAS+ ++ L PSL Q
Sbjct: 561 SLSPTSESAMLQNWRQKLERPLTTLKLNQPDSS-PASTPASIPESANNTPLHPSLSSKQE 619
Query: 190 VLLKSS 207
+ S
Sbjct: 620 TNVPKS 625
>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
Length = 2053
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 244 PTLSPGFKMCTSLMISIVPFEILVGMERAWKKEVFSGPR 128
P P F+ C +L+ ++ ++ M RAW+KEV S R
Sbjct: 1843 PRNVPNFRACCALVSALSGYQY---MRRAWRKEVISSQR 1878
>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2462
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +3
Query: 51 ENKVQAPARPGAIAPLSVVIPAHN--TGLGPEKTSFFQALSIPTKISKGTIEIINDVHIL 224
E ++ +PA +P S+ TGL P S Q LS+ T + ++ D+
Sbjct: 2069 EPRIVSPAGSSLASPTSIATSVITGVTGLHPVTVSHHQPLSVITSLVSASVSSTTDMQNS 2128
Query: 225 KPGDK 239
PG K
Sbjct: 2129 TPGKK 2133
>SB_31022| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 160
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 537 LDGGSFFKLNSVTAAMAKRFLKPLAMECGAEAIVG 433
L+GG+ +LN A + +KP M CGA G
Sbjct: 15 LEGGTVIRLNYYPALDQETIIKPSQMRCGAHTDFG 49
>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
Length = 672
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 118 WAGMTTDNGAMAPGRAGAWTLFSNSL 41
W+ T D PGRA AW+L+S +L
Sbjct: 594 WSIATLDGKDQPPGRAWAWSLWSTTL 619
>SB_33909| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1063
Score = 28.7 bits (61), Expect = 5.7
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Frame = +1
Query: 7 CSPAETSLRSVTNCWRTKSRLQLVPVPLPHCQSSFPPTTPASVQR--KPLSSKLFPSLPK 180
CSP+ ++ TN + S ++ P+P P +S PT P+ VQ+ L LP
Sbjct: 561 CSPSR-NVNKPTN--KHFSLVKPPPLPPPPAESVLHPTAPSVVQKTDTSLGQSYLSKLPS 617
Query: 181 FQRVLLKSSTMYTS*SPVTRLELLNHPSQHVEHLSILI 294
Q+ L+ P ++L P + + +L+
Sbjct: 618 PQKKPLEDLVAVECAEPSSKLSSSATPHEKSSSIPVLL 655
>SB_47997| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 37 VTNCWRTKSRLQLVPVPLPHCQSSFPPTTPASV 135
V +C R PVP PH ++S PT P SV
Sbjct: 2 VVSCPRLFLDPMPAPVPRPHARASASPTHPTSV 34
>SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10)
Length = 543
Score = 28.3 bits (60), Expect = 7.5
Identities = 21/53 (39%), Positives = 24/53 (45%)
Frame = -3
Query: 262 KGGSEAPTLSPGFKMCTSLMISIVPFEILVGMERAWKKEVFSGPRPVLWAGMT 104
K S P L P S I+P EILVG+ER +K V G L MT
Sbjct: 255 KKHSNGPPLEPKVWDLESAEWPIIPGEILVGLER--RKPVLKGLLITLCENMT 305
>SB_48995| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 216
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +1
Query: 49 WRTKSRLQLVPVPLPHCQSSFPPT--TPASVQRKPLSSKLFPS 171
+RT+SR+ L LP+ + PP+ TP + PLS PS
Sbjct: 68 YRTRSRILLPITDLPYLGLNEPPSIATPCLIPNYPLSRLFSPS 110
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,925,545
Number of Sequences: 59808
Number of extensions: 473401
Number of successful extensions: 1279
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1272
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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