Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20865
(792 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 107 6e-24
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 107 6e-24
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 107 6e-24
At5g04470.1 68418.m00445 expressed protein 29 3.5
At3g02360.2 68416.m00220 6-phosphogluconate dehydrogenase family... 28 8.2
At3g02360.1 68416.m00219 6-phosphogluconate dehydrogenase family... 28 8.2
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 107 bits (258), Expect = 6e-24
Identities = 49/83 (59%), Positives = 65/83 (78%)
Frame = +3
Query: 6 VFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKIS 185
+FT+GDL EV +++ + KV APAR G +AP+ VV+ NTGL P +TSFFQ L+IPTKI+
Sbjct: 91 IFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKIN 150
Query: 186 KGTIEIINDVHILKPGDKVGASE 254
KGT+EII V ++K GDKVG+SE
Sbjct: 151 KGTVEIITPVELIKQGDKVGSSE 173
Score = 101 bits (242), Expect = 5e-22
Identities = 44/83 (53%), Positives = 62/83 (74%)
Frame = +2
Query: 260 LLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPT 439
LL L I PFSYGLVV+ VYD+G++F+PE+LD+ + L KF +G++ V +L+LA+ YPT
Sbjct: 176 LLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPT 235
Query: 440 IASAPHSIANGFKNLLAIAAVTE 508
+A+APH N +KN LAIA T+
Sbjct: 236 LAAAPHMFINAYKNALAIAVATD 258
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 514 FEEATTIKEFIKDPSKF 564
F +A +KEF+KDPSKF
Sbjct: 261 FPQAEKVKEFLKDPSKF 277
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 107 bits (258), Expect = 6e-24
Identities = 49/83 (59%), Positives = 65/83 (78%)
Frame = +3
Query: 6 VFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKIS 185
+FT+GDL EV +++ + KV APAR G +AP+ VV+ NTGL P +TSFFQ L+IPTKI+
Sbjct: 91 IFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKIN 150
Query: 186 KGTIEIINDVHILKPGDKVGASE 254
KGT+EII V ++K GDKVG+SE
Sbjct: 151 KGTVEIITPVELIKQGDKVGSSE 173
Score = 102 bits (245), Expect = 2e-22
Identities = 45/83 (54%), Positives = 62/83 (74%)
Frame = +2
Query: 260 LLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPT 439
LL L I PFSYGLVV+ VYD+G++F+PE+LD+ + L KF +G++ V +L+LA+ YPT
Sbjct: 176 LLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPT 235
Query: 440 IASAPHSIANGFKNLLAIAAVTE 508
+A+APH N +KN LAIA TE
Sbjct: 236 LAAAPHMFINAYKNALAIAVATE 258
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 514 FEEATTIKEFIKDPSKF 564
F +A +KE++KDPSKF
Sbjct: 261 FPQAEKVKEYLKDPSKF 277
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 107 bits (258), Expect = 6e-24
Identities = 49/83 (59%), Positives = 65/83 (78%)
Frame = +3
Query: 6 VFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKIS 185
+FT+GDL EV +++ + KV APAR G +AP+ VV+ NTGL P +TSFFQ L+IPTKI+
Sbjct: 92 IFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKIN 151
Query: 186 KGTIEIINDVHILKPGDKVGASE 254
KGT+EII V ++K GDKVG+SE
Sbjct: 152 KGTVEIITPVELIKKGDKVGSSE 174
Score = 106 bits (254), Expect = 2e-23
Identities = 48/83 (57%), Positives = 63/83 (75%)
Frame = +2
Query: 260 LLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPT 439
LL L I PFSYGLVV+ VYD+G++F PE+L++ +DL KF AGV+ + ALSLAI YPT
Sbjct: 177 LLAKLGIRPFSYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPT 236
Query: 440 IASAPHSIANGFKNLLAIAAVTE 508
+A+APH N +KN+LA+A TE
Sbjct: 237 VAAAPHMFLNAYKNVLAVALATE 259
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 514 FEEATTIKEFIKDPSKF 564
F +A +KEF+KDP+KF
Sbjct: 262 FPQAENVKEFLKDPTKF 278
>At5g04470.1 68418.m00445 expressed protein
Length = 127
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 85 PLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLK 201
P P Q PP+TP+S+ + KL SL K++ ++ K
Sbjct: 51 PPPPPQKPRPPSTPSSLGIRSCKRKLMTSLSKYEIIVNK 89
>At3g02360.2 68416.m00220 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
;similar to 6-phosphogluconate dehydrogenase GB:BAA22812
GI:2529229 [Glycine max]
Length = 486
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 212 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGND 105
IVD N N R K++ E GFL+ GV GG +
Sbjct: 102 IVDGGNEWYENTERREKAVAENGFLYLGMGVSGGEE 137
>At3g02360.1 68416.m00219 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
;similar to 6-phosphogluconate dehydrogenase GB:BAA22812
GI:2529229 [Glycine max]
Length = 486
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 212 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGND 105
IVD N N R K++ E GFL+ GV GG +
Sbjct: 102 IVDGGNEWYENTERREKAVAENGFLYLGMGVSGGEE 137
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,235,921
Number of Sequences: 28952
Number of extensions: 341406
Number of successful extensions: 961
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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