Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20863
         (736 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   1.7  
SB_7863| Best HMM Match : Pentaxin (HMM E-Value=1.8)                   29   3.0  
SB_1285| Best HMM Match : SET (HMM E-Value=0.011)                      29   3.0  
SB_49487| Best HMM Match : Zip (HMM E-Value=0.014)                     29   3.9  
SB_56545| Best HMM Match : Exonuc_X-T (HMM E-Value=1.2e-09)            29   3.9  
SB_24231| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_35532| Best HMM Match : Peptidase_S49 (HMM E-Value=2.7)             29   5.2  
SB_24312| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_36409| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_4772| Best HMM Match : Peptidase_U61 (HMM E-Value=3.1)              28   6.8  
SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   6.8  
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)                 28   6.8  
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_39673| Best HMM Match : TRAP-delta (HMM E-Value=1.2e-32)            28   9.0  
SB_53580| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_346| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 652

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = +1

Query: 310 PGPPQHQEHETQNPEHHEDAEKIVSSVKN---DINTAEIALRQGFQEVSDGIGKWYARTE 480
           P PP H + E     H E  E+I S  K+   D+  A+  L++  +++ + +G  Y R  
Sbjct: 282 PNPPPHLDEEKIKQLHEELKEEIKSMAKDSEKDLEDAKKDLKEEIEQIKEEVG--YLRYM 339

Query: 481 QINEL 495
           +  +L
Sbjct: 340 EAKQL 344


>SB_7863| Best HMM Match : Pentaxin (HMM E-Value=1.8)
          Length = 604

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 101 NLSSEQEHIDQANTIKDIDNSLRANKKEVID 193
           N  S ++H+D  N++ +IDNS   N    ID
Sbjct: 408 NTLSGKDHVDNGNSLSEIDNSDNGNTLSEID 438


>SB_1285| Best HMM Match : SET (HMM E-Value=0.011)
          Length = 829

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 247 RKREVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAE-KIVSSVKNDI 402
           +K  V +  EE+ R LV L   GPP   +  T+ P   E     ++S VK ++
Sbjct: 554 KKYSVAEFREELVRQLVGLEEFGPPPAHKPPTRAPNQFETVHMPMMSDVKRNL 606


>SB_49487| Best HMM Match : Zip (HMM E-Value=0.014)
          Length = 510

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/67 (22%), Positives = 28/67 (41%)
 Frame = +1

Query: 256 EVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGF 435
           +V   ++ I+     LR+     H ++   +  HH   +KI S          + +  GF
Sbjct: 49  DVSSGSDSIENEKFTLRDDHTDNHHQNHHDHHHHHHHDKKIDSKTSIATVAWMVIVSDGF 108

Query: 436 QEVSDGI 456
             +SDG+
Sbjct: 109 HNLSDGL 115


>SB_56545| Best HMM Match : Exonuc_X-T (HMM E-Value=1.2e-09)
          Length = 416

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
 Frame = +2

Query: 137 NTIKDIDNS--LRANKKEVIDIPVKVIVEEIKPSLKSDLENVKCRMKMRKSRGL*SI*EI 310
           N +K + +S  +++ K  + D+PV   +EE       D   ++   K    RGL ++  +
Sbjct: 315 NFMKQMKHSQEVKSRKDTLCDLPVSSSMEEKIAKSGMDFNKMRSVYKEGGERGLLTVLAL 374

Query: 311 PGPRS---IKSTKHRILNTTKMLKK 376
           P   S   +K +K R+  T +++ K
Sbjct: 375 PPQYSQLNVKGSKPRVTKTIRIINK 399


>SB_24231| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 242 DLENVKCRMKMRKSRGL*SI*EIPGPRSIKSTKH 343
           D  NV  R   RK++ L      PGPR++ S KH
Sbjct: 46  DEGNVTLRKSKRKAKDLPDAINSPGPRTVDSPKH 79


>SB_35532| Best HMM Match : Peptidase_S49 (HMM E-Value=2.7)
          Length = 149

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +2

Query: 47  SIPDKVPEAEDKPLNVVDNLSSEQEHIDQ-ANTIKDIDNSLRANKKEVIDIPVKVIVEEI 223
           SIP   P+ + K LN V+N++  +E  ++ A+ + D+ N + + K E     V   V+ +
Sbjct: 74  SIPLAKPQKQQKVLNAVENINWPEEKKERFADVLNDVHN-ISSEKSEEEGDGVVFFVKSL 132

Query: 224 K 226
           K
Sbjct: 133 K 133


>SB_24312| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 787

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 247 RKREVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAE-KIVSSVKND 399
           +K  V +  EE+ R LV L   GPP   +  T+ P   E     ++S VK +
Sbjct: 554 KKYSVAEFREELVRQLVGLEEFGPPPAHKPPTRAPNQFETVHMPMMSDVKRN 605


>SB_36409| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1281

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 23/95 (24%), Positives = 43/95 (45%)
 Frame = +1

Query: 220 NQTVVEE*FRKREVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKND 399
           N+ V     R+RE+  + E++ R L + R+      Q H    P H    E+   + ++D
Sbjct: 377 NEAVAISKEREREL-QQREDLIRILTETRDQAHATLQRHGLSIPSHLPSKERPGGTAESD 435

Query: 400 INTAEIALRQGFQEVSDGIGKWYARTEQINELQAS 504
            N    +L++  + + D I +     E +NE  A+
Sbjct: 436 PNVT--SLQEQNRNLRDVIRQMRREMEGLNEQLAT 468


>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1906

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
 Frame = +1

Query: 262  PDENEEIKRPLVDLRNPGPPQHQEHETQN---PEHHEDAEKI--VSSVKNDINTAEIALR 426
            PDE E +   + DL NP   +  E E Q+     + +D EKI  V S     N + I L 
Sbjct: 831  PDEREIVLSEIYDLDNPSDDEELETEIQDALETANEQDKEKILAVYSALRSPNLSGIELA 890

Query: 427  Q 429
            Q
Sbjct: 891  Q 891


>SB_4772| Best HMM Match : Peptidase_U61 (HMM E-Value=3.1)
          Length = 363

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
 Frame = +1

Query: 373 KIVSSVKNDINTAEIALRQGFQEVSDGIGKW----YARTEQINELQASLHISKKIS 528
           K   S  N+ +  ++    GF +V  G G W    Y   E +N  Q +L   KK S
Sbjct: 43  KFTGSCTNESDVGQMRFDNGFLQVCTGTGGWRSMQYQGCEPLNVAQRNLDAFKKSS 98


>SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1040

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 20/74 (27%), Positives = 39/74 (52%)
 Frame = +2

Query: 56  DKVPEAEDKPLNVVDNLSSEQEHIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSL 235
           +KV E+ D  +  ++N   EQ  I     IK+ +  L+  +KE+  +  K+I  E+   L
Sbjct: 603 EKVNESRDDEITELENELEEQREI-----IKENEEKLKEKEKEIEKLKKKII--ELSDKL 655

Query: 236 KSDLENVKCRMKMR 277
           K D+E  + +++ +
Sbjct: 656 K-DMETSRNKVETK 668


>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
          Length = 921

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/63 (23%), Positives = 31/63 (49%)
 Frame = +2

Query: 71  AEDKPLNVVDNLSSEQEHIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSDLE 250
           AED  ++++ +  SE    D   +      S     ++ +DI V  +++E+  +  SD+E
Sbjct: 270 AEDLSIDIIGDAMSEIPQTDSVPSSSSSSESSELLHEKQLDIFVDELLKEVIENAVSDVE 329

Query: 251 NVK 259
            +K
Sbjct: 330 QIK 332


>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 8/104 (7%)
 Frame = +1

Query: 253 REVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIAL--- 423
           +EVPD+   +   +  + +  PP+H+     N  HH    K  S+ +  I  AE  L   
Sbjct: 46  KEVPDQ-VWLADDVSSVSSYSPPKHKHSSKSNGHHHNSRHKSESAKEPPILKAERKLLAS 104

Query: 424 -----RQGFQEVSDGIGKWYARTEQINELQASLHISKKISALRY 540
                   +  VSD I +    T+   + + S  IS++  A  Y
Sbjct: 105 TSPTRSANYPYVSDRIPRKSTYTQDFADGRKSKAISRRDEAYGY 148


>SB_39673| Best HMM Match : TRAP-delta (HMM E-Value=1.2e-32)
          Length = 504

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = +3

Query: 516 QENFGAQIQKLNETLHFIKPADTIAAPSVEETQNKASFETIESGLK--SLETNFNSGLNQ 689
           QEN   QI  LNE L  +    T A    E  QN     T  + +K  S+ ++ NS    
Sbjct: 134 QENAQKQINHLNELLTTLTDIITSAKEDWEGEQNSVGLLTCGAQVKAPSVNSSSNSPDES 193

Query: 690 LSEGIQIVAT 719
           + E I +  T
Sbjct: 194 VIEAINVFVT 203


>SB_53580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 940

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/57 (22%), Positives = 29/57 (50%)
 Frame = +2

Query: 89  NVVDNLSSEQEHIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSDLENVK 259
           ++  N+S++  H+     + ++    RANK  ++D      ++EI+ S  S L  ++
Sbjct: 812 DITSNVSAQDAHLTSRPAL-ELSEEFRANKDTIVDKNSSSNLKEIQKSQASSLPKIE 867


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,103,777
Number of Sequences: 59808
Number of extensions: 391465
Number of successful extensions: 1425
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1423
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)