Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20863
(736 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contai... 34 0.085
At3g61390.2 68416.m06872 U-box domain-containing protein several... 34 0.11
At1g51070.1 68414.m05741 basic helix-loop-helix (bHLH) family pr... 32 0.45
At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containi... 31 0.60
At5g65910.1 68418.m08296 BSD domain-containing protein contains ... 31 0.79
At1g12380.1 68414.m01431 expressed protein 30 1.4
At1g03830.1 68414.m00364 guanylate-binding family protein contai... 29 3.2
At5g29624.1 68418.m03640 DC1 domain-containing protein contains ... 29 4.2
At4g37910.1 68417.m05361 heat shock protein 70, mitochondrial, p... 29 4.2
At4g03430.1 68417.m00470 pre-mRNA splicing factor-related simila... 29 4.2
At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family pr... 29 4.2
At2g30410.1 68415.m03704 tubulin folding cofactor A (KIESEL) ide... 29 4.2
At5g35604.1 68418.m04242 hypothetical protein 28 5.6
At4g33060.1 68417.m04709 peptidyl-prolyl cis-trans isomerase cyc... 28 5.6
At3g28600.1 68416.m03570 AAA-type ATPase family protein contains... 28 5.6
At2g40435.1 68415.m04988 expressed protein 28 5.6
At4g02400.1 68417.m00324 U3 ribonucleoprotein (Utp) family prote... 28 7.4
At1g04730.1 68414.m00469 AAA-type ATPase family protein contains... 28 7.4
At5g60800.1 68418.m07628 heavy-metal-associated domain-containin... 27 9.8
At5g54050.1 68418.m06722 DC1 domain-containing protein 27 9.8
At5g48310.1 68418.m05968 expressed protein 27 9.8
At3g04010.1 68416.m00422 glycosyl hydrolase family 17 protein si... 27 9.8
At1g34480.1 68414.m04285 DC1 domain-containing protein contains ... 27 9.8
>At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contains
Pfam profile: PF00628: PHD-finger
Length = 704
Score = 34.3 bits (75), Expect = 0.085
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 533 SAEIFLEMCKLA-WSSLICSVRAYHFPIPSDTSW 435
S+E + + C+ WS+ S R YHF IP DT W
Sbjct: 87 SSEPYCDHCRCTGWSNHFVSKRKYHFIIPIDTEW 120
>At3g61390.2 68416.m06872 U-box domain-containing protein several
hypothetical proteins - Arabidopsis thaliana
Length = 435
Score = 33.9 bits (74), Expect = 0.11
Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 2/111 (1%)
Frame = +1
Query: 253 REVPDENEEIKRPLVDLRN-PGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQ 429
R + +E EE+K L ++ G + +E T N H E + + + +DI
Sbjct: 317 RGIREEQEELKIKLREVSKLKGKREEEEASTSN--HREPPQYFICPITHDIMEDPHVAAD 374
Query: 430 GFQEVSDGIGKWYARTEQINE-LQASLHISKKISALRYKS*MKRYILLNQL 579
GF + I +W+ R + + + L + + L +S ++ ++ L +L
Sbjct: 375 GFTYEGEAISRWFERGHETSPMINKRLPHTSLVPNLALRSAIQEWLQLREL 425
>At1g51070.1 68414.m05741 basic helix-loop-helix (bHLH) family
protein similar to bHLH transcription factor GI:3757520
from [Arabidopsis thaliana]
Length = 226
Score = 31.9 bits (69), Expect = 0.45
Identities = 23/96 (23%), Positives = 48/96 (50%)
Frame = +2
Query: 53 PDKVPEAEDKPLNVVDNLSSEQEHIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPS 232
P + P+ DK + D + + D+A +KD+++SL+ KE+ D K + + K
Sbjct: 95 PGRTPKT-DKVAIINDAIRMVNQARDEAQKLKDLNSSLQEKIKELKD--EKNELRDEKQK 151
Query: 233 LKSDLENVKCRMKMRKSRGL*SI*EIPGPRSIKSTK 340
LK + E + ++K K++ +P P+++ +
Sbjct: 152 LKVEKERIDQQLKAIKTQPQPQPCFLPNPQTLSQAQ 187
>At2g30780.1 68415.m03753 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 452
Score = 31.5 bits (68), Expect = 0.60
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +1
Query: 340 TQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYART 477
T P HH D + VS +K+++ T + ++ FQ V D G+W RT
Sbjct: 20 TSLPAHHTDLVQRVSILKDELLTIGNS-KEKFQNVLDQKGQWLFRT 64
>At5g65910.1 68418.m08296 BSD domain-containing protein contains
Pfam profile PF03909: BSD domain
Length = 432
Score = 31.1 bits (67), Expect = 0.79
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = +1
Query: 301 LRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGI 456
L P + Q P+H E+ E +++ +KND R G ++S +
Sbjct: 64 LSQPSSSPDLQERNQTPDHPEEDEDLIAGIKNDFAEIGGRFRTGISKLSGNL 115
>At1g12380.1 68414.m01431 expressed protein
Length = 793
Score = 30.3 bits (65), Expect = 1.4
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Frame = +1
Query: 223 QTVVEE*FRKREVPDENEE-IKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKND 399
+ VVE F+K P I PL +R+ + +PE +D +K+++ + +
Sbjct: 586 EKVVERRFKKSYHPAWAAAFILDPLYLIRDSSGKYLPPFKCLSPEQEKDVDKLITRLVSR 645
Query: 400 INTAEIALRQGFQEVSDGIGKWYARTEQINE 492
+ A IAL + + ++G+ YAR Q+ E
Sbjct: 646 -DEAHIALMELMKWRTEGLDPMYARAVQMKE 675
>At1g03830.1 68414.m00364 guanylate-binding family protein contains
Pfam domains PF02263: Guanylate-binding protein,
N-terminal domain and PF02841: Guanylate-binding
protein, C-terminal domain
Length = 991
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/64 (26%), Positives = 33/64 (51%)
Frame = +2
Query: 92 VVDNLSSEQEHIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSDLENVKCRMK 271
V + +++ +E + QA+T +D LRA V+D K+I E+ + + R +
Sbjct: 536 VTEKIAAMEEKLKQASTTED---GLRAEFSRVLDEKEKIITEKAAKLATLEQQLASTRAE 592
Query: 272 MRKS 283
++KS
Sbjct: 593 LKKS 596
>At5g29624.1 68418.m03640 DC1 domain-containing protein contains
Pfam PF03107: DC1 domain
Length = 488
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 256 EVPDENEEIKRPLVDLRNPGPPQHQEHE 339
+VPDE EEIK P + G H HE
Sbjct: 264 DVPDEEEEIKDPFKVINENGDIVHISHE 291
>At4g37910.1 68417.m05361 heat shock protein 70, mitochondrial,
putative / HSP70, mitochondrial, putative strong
similarity to SP|Q01899 Heat shock 70 kDa protein,
mitochondrial precursor {Phaseolus vulgaris}
Length = 682
Score = 28.7 bits (61), Expect = 4.2
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Frame = +1
Query: 247 RKREVPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALR 426
++ E+ + ++ K+ L+DLRN E E+ EKI + + ++I TA LR
Sbjct: 561 KEAELNAQKDQEKKQLIDLRNSADTTIYSVEKSLSEYR---EKIPAEIASEIETAVSDLR 617
Query: 427 QGF--QEVSDGIGKWYARTEQINELQASLHISK 519
++V D K A + ++++ H+SK
Sbjct: 618 TAMAGEDVEDIKAKVEAANKAVSKI--GEHMSK 648
>At4g03430.1 68417.m00470 pre-mRNA splicing factor-related similar
to pre-mRNA splicing factor pre-mRNA splicing factor
prp1 (SP:Q12381) [Fission yeast]
Length = 1029
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/48 (22%), Positives = 24/48 (50%)
Frame = +1
Query: 382 SSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQINELQASLHISKKI 525
+ +++D+ LR+G + + D + W A E NE A + + + +
Sbjct: 458 AKLEHDVENKSRVLRKGLEHIPDSVRLWKAVVELANEEDARILLHRAV 505
>At3g19860.1 68416.m02515 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 284
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = +2
Query: 77 DKPLNVVDNLSSEQEHIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSDLENV 256
DK + D + +E + N +K +L +E+ K + E K SLKSD+EN+
Sbjct: 40 DKATILTDTVQLLKELTSEVNKLKSEYTALTDESRELTQ--EKNDLREEKTSLKSDIENL 97
Query: 257 KCRMKMR 277
+ + R
Sbjct: 98 NLQYQQR 104
>At2g30410.1 68415.m03704 tubulin folding cofactor A (KIESEL)
identical to cDNA tubulin folding cofactor A,
GI:20514256, SP|O04350 Tubulin-specific chaperone A
(Tubulin-folding cofactor A) (CFA) (TCP1-chaperonin
cofactor A homolog) {Arabidopsis thaliana}
Length = 113
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +1
Query: 259 VPDENEEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDINTAE 414
+PD ++ ++ L DL++ + E + PE EDA+K V+ V+ T +
Sbjct: 62 IPDCHKRLESALADLKSTLAELEETDEKEGPE-IEDAKKTVADVEKQFPTED 112
>At5g35604.1 68418.m04242 hypothetical protein
Length = 298
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 27 CSPHAQPPSRTRSPRPKI 80
CSP PPSRT P P +
Sbjct: 92 CSPRLSPPSRTMGPPPPV 109
>At4g33060.1 68417.m04709 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 504
Score = 28.3 bits (60), Expect = 5.6
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = +2
Query: 26 VLAARAASIPDKVPEAEDKPLNVVDNLSSEQEHIDQANTIK---DIDNSLRANKKEVIDI 196
VL+ R A K +DK +V D + + + D + K + N + + +KE+ D
Sbjct: 256 VLSVREALNAKKEAAQKDKSFSVSDTVGNSDDDDDGEDETKFDAKMRNQVLSRRKEIGDT 315
Query: 197 PVKVIVEEIKPSLKSDLENVK 259
P K ++ SLK E+ +
Sbjct: 316 PSKPTQKKKSSSLKGREESTQ 336
>At3g28600.1 68416.m03570 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 50 IPDKVPEAEDKPLNVVDNLSSEQEHIDQANTIKDIDNSLRANKK 181
I + E + P +V +NL + ID ++KD+ +L KK
Sbjct: 405 IESLLKETKIAPADVAENLMKKNTEIDADGSLKDLIQALEGKKK 448
>At2g40435.1 68415.m04988 expressed protein
Length = 158
Score = 28.3 bits (60), Expect = 5.6
Identities = 25/99 (25%), Positives = 41/99 (41%)
Frame = +3
Query: 438 GSVRRYWKMVRSYRAN*RAPGQLAHFQENFGAQIQKLNETLHFIKPADTIAAPSVEETQN 617
GS++ ++++RS N A + + IQKL + + T S E T
Sbjct: 9 GSLQEKFQLLRSI-TNSHAENDTSIIMDA-SKYIQKLKQKVERFNQDPTAEQSSSEPTDP 66
Query: 618 KASFETIESGLKSLETNFNSGLNQLSEGIQIVATFKADG 734
K T+E+ K N SG NQ + ++ F+ G
Sbjct: 67 KTPMVTVETLDKGFMINVFSGKNQPGMLVSVLEAFEDIG 105
>At4g02400.1 68417.m00324 U3 ribonucleoprotein (Utp) family protein
contains Pfam profile: PF04615 Utp14 protein
Length = 858
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +2
Query: 176 KKEVIDIPVKVIVEEIKPSLKSDLENVKCRMKMRKSRG 289
K VI PVK EE+ P+ K+D EN + K R +G
Sbjct: 805 KAGVIIKPVKF--EEVNPNEKADDENPRSHQKQRPKKG 840
>At1g04730.1 68414.m00469 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 954
Score = 27.9 bits (59), Expect = 7.4
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +2
Query: 74 EDKPLNVVDNLSSEQEHIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSL-KSDLE 250
E + L+VV S + + I +ID +L + K +D+ +K+++ E K + K ++E
Sbjct: 388 ETRILDVVQMNSVTADSRPKCLVIDEIDGAL-GDGKGAVDVILKMVLAERKHATGKENVE 446
Query: 251 NVKCRMK 271
NVK K
Sbjct: 447 NVKTSSK 453
>At5g60800.1 68418.m07628 heavy-metal-associated domain-containing
protein similar to farnesylated protein ATFP3
[GI:4097547]; contains Pfam profile PF00403:
Heavy-metal-associated domain
Length = 283
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 274 EEIKRPLVDLRNPGPPQHQEHETQNPEHHEDAEKIVSSVKNDIN 405
EE + VDL +P P + +E E +N ++ ED +K K D N
Sbjct: 81 EEKTKKKVDLVSPQPKKEKEKENKN-KNDEDKKKSEEKKKPDNN 123
>At5g54050.1 68418.m06722 DC1 domain-containing protein
Length = 580
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 256 EVPDENEEIKRPLVDLRNPGPPQHQEHE 339
+VP+E EEIK P + G H HE
Sbjct: 276 DVPEEEEEIKDPFKVINEKGDIVHFSHE 303
>At5g48310.1 68418.m05968 expressed protein
Length = 1156
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 633 TIESGLKSLETNFNSGLNQLSEGIQIVAT 719
T+ KSL+ NF SGL +S +Q+ AT
Sbjct: 636 TVFENYKSLDENFPSGLADISCPVQVSAT 664
>At3g04010.1 68416.m00422 glycosyl hydrolase family 17 protein
similar to beta-1,3-glucanase GB:S12402 [Nicotiana sp],
GB:CAA03908 [Citrus sinensis], GB:S44364 [Lycopersicon
esculentum]
Length = 491
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -2
Query: 510 VQAGLELVNLLGTS-VPFSNTV*HFLEALTKSDFRCVNVIFDGRN 379
+Q ++VN L + PF+ + FL SDF FDG+N
Sbjct: 191 IQEMTQIVNFLAQNKAPFTVNIYPFLSLYLSSDFPFEYAFFDGQN 235
>At1g34480.1 68414.m04285 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 602
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -3
Query: 668 ICL*RLETRFDCFKRSFILRF 606
IC R +TRFDC K F+L F
Sbjct: 445 ICKVRSQTRFDCGKCDFVLCF 465
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,148,914
Number of Sequences: 28952
Number of extensions: 279104
Number of successful extensions: 1151
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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