Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20862
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6460| Best HMM Match : SRCR (HMM E-Value=2e-08)                     30   1.6  
SB_10476| Best HMM Match : Lactamase_B (HMM E-Value=7.4e-08)           29   2.8  
SB_4416| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_645| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   5.0  
SB_43972| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_36954| Best HMM Match : PH (HMM E-Value=1.2e-22)                    28   8.7  

>SB_6460| Best HMM Match : SRCR (HMM E-Value=2e-08)
          Length = 234

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/64 (23%), Positives = 28/64 (43%)
 Frame = +1

Query: 478 RFGRGDKTGGQPLVKEEKKLIDSDPVVLPPRNSPSPESKPSPGIDNNVTCQKVSVIQRTP 657
           +  R  +    P + E  ++ +S  +   P+ S SP+   SP I  +    +   I R+P
Sbjct: 128 KISRSPQISESPQISESSQISESSQISESPQISESPQISESPQISRSSQISRSPQISRSP 187

Query: 658 SQSQ 669
             S+
Sbjct: 188 QISE 191


>SB_10476| Best HMM Match : Lactamase_B (HMM E-Value=7.4e-08)
          Length = 866

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = +1

Query: 505 GQPLVKEEKKLIDSDPVVLPPRNSPSPES---KPSPG-IDNNVTCQKVSVIQRTPSQSQF 672
           G P+    K+L+  +PVVLP   +  P+     P PG I   + C     +Q   +   F
Sbjct: 278 GIPVGHMRKELLSGNPVVLPDGRTVKPDEVVVPPKPGQIFAVIDCSTAEKLQLLTNHKYF 337

Query: 673 RDN 681
           +D+
Sbjct: 338 QDH 340


>SB_4416| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 503

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 508 QPLVKEEKKLIDSDPVVLPPRNSPSPESKP 597
           QP   ++  L+D +P+V PP  SPS  S P
Sbjct: 92  QPTTPQQPSLLD-EPIVTPPIPSPSESSSP 120


>SB_645| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 684

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +1

Query: 568 RNSPSPESKP--SPGIDNNVTCQKVSVIQRTPSQSQFRDNKKED 693
           R+SPSP  +   SPG  +NVT +K      TP +S  R  K ++
Sbjct: 161 RSSPSPPKRQGRSPGRPSNVTAEKNE--PETPKRSPVRSRKAKE 202


>SB_43972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 899

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +1

Query: 544 SDPVVLPPRNSPSPESKPSP 603
           SDP  LPPR   S E  PSP
Sbjct: 803 SDPPPLPPRRKKSHEDSPSP 822


>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3762

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 481  FGRGDKTGGQPLVKEEKKLIDSDPVVLPPR 570
            FG      G P+V+E KK   + PV+ PP+
Sbjct: 2593 FGAHSSVFGSPVVQEVKKTEKASPVLSPPK 2622


>SB_31182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1280

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
 Frame = +1

Query: 490  GDKTGGQPLVKEEKKLIDS---DPVVLPPRNSPSPESKPSPGIDNNVTCQK 633
            G +   Q   +  K   DS   +PVV PP   P P  KP   ++   T  K
Sbjct: 1034 GHRAAAQAYARTRKMNFDSFELNPVVKPPSYPPPPPPKPPRTMEYGTTTDK 1084


>SB_36954| Best HMM Match : PH (HMM E-Value=1.2e-22)
          Length = 501

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/53 (22%), Positives = 27/53 (50%)
 Frame = +1

Query: 559 LPPRNSPSPESKPSPGIDNNVTCQKVSVIQRTPSQSQFRDNKKEDVTIPTTLP 717
           +PP  +P+P++  +P +D +V    V  + + P     + +   D+++P   P
Sbjct: 308 IPPGFTPTPKADTAPAVDRSVKPPTVDRLTKPPVNRTLKPSM--DMSVPNVHP 358


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,871,125
Number of Sequences: 59808
Number of extensions: 376566
Number of successful extensions: 1263
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)