Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20862
         (718 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58960.2 68418.m07386 expressed protein contains Pfam profile...    30   1.3  
At5g58960.1 68418.m07385 expressed protein contains Pfam profile...    30   1.3  
At5g21160.1 68418.m02528 La domain-containing protein / proline-...    29   3.1  
At1g65850.1 68414.m07472 disease resistance protein (TIR-NBS-LRR...    29   3.1  
At1g19670.1 68414.m02452 coronatine-responsive protein / coronat...    29   3.1  
At5g09380.1 68418.m01087 DNA-directed RNA polymerase III RPC4 fa...    29   4.1  
At1g33770.1 68414.m04174 protein kinase family protein contains ...    29   4.1  
At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f...    28   5.4  
At1g69340.1 68414.m07956 appr-1-p processing enzyme family prote...    28   5.4  
At1g51240.1 68414.m05763 hypothetical protein similar to hypothe...    28   7.1  
At1g17440.2 68414.m02133 transcription initiation factor IID (TF...    28   7.1  
At1g17440.1 68414.m02132 transcription initiation factor IID (TF...    28   7.1  
At4g40010.1 68417.m05665 serine/threonine protein kinase, putati...    27   9.4  

>At5g58960.2 68418.m07386 expressed protein contains Pfam profile
           PF04859: Plant protein of unknown function (DUF641
          Length = 484

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 243 KTDPSVPILRSTMAPYRSFRKRIKKRNALMVTYLEKTKALMKIA 374
           K D    +LR  +APY +  K +KK   +  T +E  K  +K+A
Sbjct: 152 KNDAGRGMLREAVAPYEAVVKELKKEVKVKDTEIENLKEKVKVA 195


>At5g58960.1 68418.m07385 expressed protein contains Pfam profile
           PF04859: Plant protein of unknown function (DUF641
          Length = 559

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 243 KTDPSVPILRSTMAPYRSFRKRIKKRNALMVTYLEKTKALMKIA 374
           K D    +LR  +APY +  K +KK   +  T +E  K  +K+A
Sbjct: 227 KNDAGRGMLREAVAPYEAVVKELKKEVKVKDTEIENLKEKVKVA 270


>At5g21160.1 68418.m02528 La domain-containing protein /
           proline-rich family protein contains proline-rich
           extensin domains, INTERPRO:IPR002965, PF05383: La domain
          Length = 826

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 347 ENKGTHENRTKETRRFISS 403
           +NKGTH++ T   RRF SS
Sbjct: 578 QNKGTHKHHTAHARRFFSS 596


>At1g65850.1 68414.m07472 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1036

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 377 KETRRFISSILGGDIPYGHRSHVLTQAERKQYLPVLVEEIKQEDNL 514
           K T +   S  G D+  G  SH+  + +RK   P +  EIK+ +++
Sbjct: 30  KWTHQVFPSFRGEDVRRGFLSHIHKEFQRKGITPFIDNEIKRGESI 75


>At1g19670.1 68414.m02452 coronatine-responsive protein /
           coronatine-induced protein 1 (CORI1) identical to
           coronatine-induced protein 1 (CORI1) GI:30912637 from
           [Arabidopsis thaliana]
          Length = 324

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 520 KEEKKLIDSDPVVLPPRNSPSPESKPSPGI 609
           K E +LI  DP V P +  PSPE + + GI
Sbjct: 293 KAEIRLIVKDPSVSPAKLDPSPELEEASGI 322


>At5g09380.1 68418.m01087 DNA-directed RNA polymerase III RPC4
           family protein low similarity to SP|P25441 DNA-directed
           RNA polymerase III 47 kDa polypeptide (EC 2.7.7.6) (C53)
           (RNA polymerase C subunit 4) {Saccharomyces cerevisiae};
           contains Pfam profile PF05132: RNA polymerase III RPC4
          Length = 272

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +1

Query: 562 PPRNSPSPESKPSPGIDNNVTCQKVSVIQRTPSQSQFRDNKKEDVTIPTT 711
           PP+  P PE KP    DN+ + Q   +++R   +S  +   K D  +P +
Sbjct: 17  PPKRVPKPEVKPEVVEDNSNSAQASELLRRVNERSLRK--PKADKKVPAS 64


>At1g33770.1 68414.m04174 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 614

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
 Frame = +1

Query: 511 PLVKEEKKLIDSDPVVLPPRNSPSPESKPSPGIDNNV----------TCQKVSVIQRTPS 660
           P  K+EK+  D++ V+ P   S   E KPS    NNV          + QK +++ R P+
Sbjct: 497 PSFKKEKRFTDTNSVIHPSSRSNVGEVKPSR--SNNVPATMGDYLASSSQKENIVSRAPA 554

Query: 661 QSQFRDNKKEDVTIPTTLP 717
            +  R   +   + P   P
Sbjct: 555 TTYMRKKNRMHYSGPLMPP 573


>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
           family protein / zinc finger (MYND type) family protein
           similar to ubiquitin-specific protease 15 (UBP15)
           [Arabidopsis thaliana] GI:11993475; contains Pfam
           profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
           PF01753: MYND finger
          Length = 631

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 565 PRNSPSPESKPSPGIDNNVTCQKVSVIQRTPSQS 666
           P  SPSP   PSP +  +  C +V  I    S+S
Sbjct: 537 PSPSPSPSPSPSPSVLASECCSEVERIDTLDSES 570


>At1g69340.1 68414.m07956 appr-1-p processing enzyme family protein
           contains Pfam domain PF01661: Appr-1-p processing enzyme
           family
          Length = 562

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 490 GDKTGGQPLVKEEKKLIDSDPVVLPPRNSPSPESKPS 600
           GD+ G + ++ E K  I + P   PPR+ P+P  +PS
Sbjct: 273 GDENG-ETVIDERKIRIQALPNKPPPRSFPTPLERPS 308


>At1g51240.1 68414.m05763 hypothetical protein similar to
           hypothetical protein GB:AAD30637
          Length = 127

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 601 PGIDNNVTCQKVSVIQRTPS 660
           PGID N+ C++ S I+RTPS
Sbjct: 22  PGIDLNIACRQFS-IERTPS 40


>At1g17440.2 68414.m02133 transcription initiation factor IID
           (TFIID) subunit A family protein similar to SP|Q16514
           Transcription initiation factor TFIID 20/15 kDa subunits
           (TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
           profile PF03847: Transcription initiation factor TFIID
           subunit A
          Length = 683

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 544 SDPVVLPPRNSPSPESKPSPGIDNNV-TCQKVSVIQRTPSQSQ 669
           S+P +     SPSP S PS  +D    T Q V   Q+ P Q Q
Sbjct: 84  SNPPIGAQIPSPSPLSHPSSSLDQQTQTQQLVQQTQQLPQQQQ 126


>At1g17440.1 68414.m02132 transcription initiation factor IID
           (TFIID) subunit A family protein similar to SP|Q16514
           Transcription initiation factor TFIID 20/15 kDa subunits
           (TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
           profile PF03847: Transcription initiation factor TFIID
           subunit A
          Length = 683

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +1

Query: 544 SDPVVLPPRNSPSPESKPSPGIDNNV-TCQKVSVIQRTPSQSQ 669
           S+P +     SPSP S PS  +D    T Q V   Q+ P Q Q
Sbjct: 84  SNPPIGAQIPSPSPLSHPSSSLDQQTQTQQLVQQTQQLPQQQQ 126


>At4g40010.1 68417.m05665 serine/threonine protein kinase, putative
           similar to serine-threonine protein kinase [Triticum
           aestivum] gi|2055374|gb|AAB58348
          Length = 350

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 182 NPEDFRHLRALINTALDPSVRVCHFVYLKFTCKHLIT 72
           +PED R++R  I   L     +  +V +   CKHL++
Sbjct: 202 DPEDPRNIRNTIQRILSVHYTIPDYVRISSECKHLLS 238


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,561,732
Number of Sequences: 28952
Number of extensions: 251764
Number of successful extensions: 1046
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)