Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20845
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0046 + 14411844-14413154,14413753-14413800,14413879-144139...    29   5.0  
03_02_0003 - 4862220-4863428                                           29   5.0  

>10_08_0046 +
           14411844-14413154,14413753-14413800,14413879-14413992,
           14414218-14414496,14414602-14414715,14415210-14415282,
           14415973-14416073
          Length = 679

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
 Frame = -1

Query: 588 KLLLFQGNLSF*APFLYQDHKSLYLL---LIKIYSACYQLQERVLTSFRFAA 442
           +L+L    LSF +         LY+L   LI ++S+C  + E++LT++R A+
Sbjct: 583 QLVLIDFGLSFISTIPEDKAVDLYVLERALISMHSSCGDVMEKILTAYRKAS 634


>03_02_0003 - 4862220-4863428
          Length = 402

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 262 INMIIEHLNTKDWNQEKLIAFLDLLKKKLSDIVLMSIYHHNCSYGEVITSFD 417
           I   +   NT+   +EK I +LD+   +  DI  + IYH    Y ++  + D
Sbjct: 20  ITQKVTGFNTETTTKEKPIGYLDVFVHQARDIHNICIYHKQDVYAKLCLTSD 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,829,070
Number of Sequences: 37544
Number of extensions: 262176
Number of successful extensions: 521
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)