Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20845
         (726 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69480.1 68414.m07983 EXS family protein / ERD1/XPR1/SYG1 fam...    34   0.11 
At4g13750.1 68417.m02134 expressed protein                             33   0.25 
At2g22810.1 68415.m02707 1-aminocyclopropane-1-carboxylate synth...    28   5.5  
At2g19800.1 68415.m02313 expressed protein similar to myo-inosit...    28   7.2  
At4g10430.3 68417.m01715 expressed protein                             27   9.6  
At4g10430.2 68417.m01713 expressed protein                             27   9.6  
At4g10430.1 68417.m01714 expressed protein                             27   9.6  

>At1g69480.1 68414.m07983 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to  PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 777

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -2

Query: 617 ILPEC---IVFYSSYYSFKGIYHSKHHFFIKIINHCICFSLKFIVL 489
           ++P C   IV +  +  F  IY S   FFI+ + HCIC  L  + L
Sbjct: 497 VIPLCLATIVLFILFCPFNIIYRSSRFFFIRSLFHCICAPLYEVTL 542


>At4g13750.1 68417.m02134 expressed protein
          Length = 2137

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 250  E*YDINMIIEHLNTKDWNQEKLIAFLDLLKK 342
            E YDIN++   L  KDW   +L+  L LL K
Sbjct: 1318 EKYDINLLSPDLTVKDWESPELVDLLSLLHK 1348


>At2g22810.1 68415.m02707 1-aminocyclopropane-1-carboxylate synthase
           4 /  ACC synthase 4  (ACS4) identical to gi:940370
           [GB:U23481]
          Length = 474

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +2

Query: 50  SN*LCIIKIYTEMDIIFRKINSIEHFDIICNEIINNMYTRSDEKIS--EIVENNVIQ 214
           SN L      TE++I+F  I   ++  ++ +EI +     S E IS  EI++NN ++
Sbjct: 201 SNPLGTTTTQTELNILFDFITKNKNIHLVSDEIYSGTVFNSSEFISVMEILKNNQLE 257


>At2g19800.1 68415.m02313 expressed protein similar to myo-inositol
           oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
          Length = 317

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +2

Query: 98  FRKINSIEHFDIICNEIINNMYTRSDEKISEIVENNVIQTAK 223
           + K+N +E     C E++NN+   SD  + E    +++QTA+
Sbjct: 93  YGKLNKMEMSIWECCELLNNVVDESDPDLDEPQIQHLLQTAE 134


>At4g10430.3 68417.m01715 expressed protein
          Length = 347

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 328 DLLKKKLSDIVLMSIYHHNCSYGEVITSFDWLLK 429
           ++L+   SDI    +YHH C+    + S  W +K
Sbjct: 174 NILRANGSDIRPWWLYHHYCAMAMALVSLTWEIK 207


>At4g10430.2 68417.m01713 expressed protein
          Length = 271

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 328 DLLKKKLSDIVLMSIYHHNCSYGEVITSFDWLLK 429
           ++L+   SDI    +YHH C+    + S  W +K
Sbjct: 98  NILRANGSDIRPWWLYHHYCAMAMALVSLTWEIK 131


>At4g10430.1 68417.m01714 expressed protein
          Length = 347

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 328 DLLKKKLSDIVLMSIYHHNCSYGEVITSFDWLLK 429
           ++L+   SDI    +YHH C+    + S  W +K
Sbjct: 174 NILRANGSDIRPWWLYHHYCAMAMALVSLTWEIK 207


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,339,414
Number of Sequences: 28952
Number of extensions: 252976
Number of successful extensions: 552
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)