Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20826
(479 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)... 80 7e-16
At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)... 80 7e-16
At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative 80 9e-16
At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)... 79 1e-15
At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)... 79 1e-15
At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C) 79 2e-15
At3g49460.1 68416.m05406 60S acidic ribosomal protein-related co... 38 0.004
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast... 29 1.6
At5g05340.1 68418.m00575 peroxidase, putative similar to peroxid... 28 3.7
At5g45930.1 68418.m05648 magnesium-chelatase subunit chlI, chlor... 27 5.0
At5g61070.1 68418.m07663 histone deacetylase family protein (HDA... 27 8.7
At4g16155.1 68417.m02451 dihydrolipoamide dehydrogenase 2, plast... 27 8.7
At1g29120.2 68414.m03565 expressed protein 27 8.7
At1g29120.1 68414.m03564 expressed protein 27 8.7
>At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B)
similar to acidic ribosomal protein p1
Length = 113
Score = 80.2 bits (189), Expect = 7e-16
Identities = 35/66 (53%), Positives = 49/66 (74%)
Frame = +3
Query: 54 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 233
M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V++E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60
Query: 234 TNIGSG 251
N+G+G
Sbjct: 61 MNVGAG 66
>At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B)
similar to acidic ribosomal protein p1
Length = 113
Score = 80.2 bits (189), Expect = 7e-16
Identities = 35/66 (53%), Positives = 49/66 (74%)
Frame = +3
Query: 54 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 233
M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V++E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLI 60
Query: 234 TNIGSG 251
N+G+G
Sbjct: 61 MNVGAG 66
>At5g24510.1 68418.m02889 60s acidic ribosomal protein P1, putative
Length = 111
Score = 79.8 bits (188), Expect = 9e-16
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +3
Query: 57 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLIT 236
+S +ELAC Y+ALIL DD + +T E IS ++K A V+VE YWP LFAK E N+ DLI
Sbjct: 1 MSTSELACTYAALILHDDGIEITAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIM 60
Query: 237 NIGSG 251
N+G+G
Sbjct: 61 NVGAG 65
>At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A)
similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
from [Arabidopsis thaliana]
Length = 112
Score = 79.4 bits (187), Expect = 1e-15
Identities = 35/66 (53%), Positives = 48/66 (72%)
Frame = +3
Query: 54 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 233
M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60
Query: 234 TNIGSG 251
N+G+G
Sbjct: 61 MNVGAG 66
>At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A)
similar to 60S ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095
from [Arabidopsis thaliana]
Length = 112
Score = 79.4 bits (187), Expect = 1e-15
Identities = 35/66 (53%), Positives = 48/66 (72%)
Frame = +3
Query: 54 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 233
M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLI 60
Query: 234 TNIGSG 251
N+G+G
Sbjct: 61 MNVGAG 66
>At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)
Length = 113
Score = 79.0 bits (186), Expect = 2e-15
Identities = 35/66 (53%), Positives = 48/66 (72%)
Frame = +3
Query: 54 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 233
M + ELAC Y+ +IL D+ +A+T +KI+T++KAA V +E YWP LFAK E NV DLI
Sbjct: 1 MSTVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLI 60
Query: 234 TNIGSG 251
N+G+G
Sbjct: 61 MNVGAG 66
>At3g49460.1 68416.m05406 60S acidic ribosomal protein-related
contains weak similarity to Swiss-Prot:52855 60S acidic
ribosomal protein P1 (L12) [Zea mays]
Length = 46
Score = 37.9 bits (84), Expect = 0.004
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = +3
Query: 57 VSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGL 191
++ ELAC Y+AL+L D VT +ST++K A +++E YWP L
Sbjct: 1 MATGELACTYAALLLHDH---VT---MSTLVKTANLNIESYWPSL 39
>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
to plastidic lipoamide dehydrogenase from Arabidopsis
thaliana [gi:7159282]
Length = 570
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/84 (19%), Positives = 36/84 (42%)
Frame = +3
Query: 21 GLRQLARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAK 200
G +++ K +++ ++ ++ V + V G+ + T A ++ P W +
Sbjct: 203 GPQKVKYGKDNIITAKDIIIATGSVPFVPKGIEVDGKTVITSDHALKLESVPEWIAIVGS 262
Query: 201 ALEGINVRDLITNIGSGVVLLRPL 272
G+ D+ T +GS V + L
Sbjct: 263 GYIGLEFSDVYTALGSEVTFIEAL 286
>At5g05340.1 68418.m00575 peroxidase, putative similar to peroxidase
[Nicotiana tabacum] gi|5381253|dbj|BAA82306; similar to
Peroxidase P7 [Brassica rapa (Turnip)] SWISS-PROT:P00434
Length = 324
Score = 27.9 bits (59), Expect = 3.7
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 205 KALANRPGQYGSTSTAAAFKMVEIFSPVTATSSSTR 98
+ +N P + S TAA KM +I SP+T +S R
Sbjct: 283 RGYSNNPSSFNSDFTAAMIKMGDI-SPLTGSSGEIR 317
>At5g45930.1 68418.m05648 magnesium-chelatase subunit chlI,
chloroplast, putative / Mg-protoporphyrin IX chelatase,
putative similar to SP|P161127 from Arabidopsis
thaliana, SP|P93162 from Glycine max, SP|O22436 from
Nicotiana tabacum; non-consensus AA donor splice site at
exon 1, TG acceptor splice site at exon 2
Length = 418
Score = 27.5 bits (58), Expect = 5.0
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +3
Query: 51 KMVSKAELACVYSALILVDDDVAVTGEKIS---TILKAAAVDVEPYWPGLFAKALEGI 215
K+ EL+ + + + +VD + T +++ I KA V+ + PGL AKA GI
Sbjct: 158 KVQKGEELSVIETKINMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGI 215
>At5g61070.1 68418.m07663 histone deacetylase family protein (HDA18)
identical to HDA18 [Arabidopsis thaliana] GI:21105769;
similar to SP|Q9UBN7 Histone deacetylase 6 (HD6) {Homo
sapiens}; contains Pfam profile PF00850: Histone
deacetylase family
Length = 682
Score = 26.6 bits (56), Expect = 8.7
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Frame = +3
Query: 48 LKMVSKAELACVYSALILVDDDVAVTGEKI---ST--ILKAAAVDVEPYWPGLFAKALEG 212
L+ + K+ LACV ++L D + + E ST +++A + YWP L A
Sbjct: 366 LESLGKSSLACVQ--VLLEDKQIHGSSETYPLESTRRVIQAVRERLCTYWPSLDASMASN 423
Query: 213 INVRDLITNIGSGVVLLRPLVE 278
N+++ S LLR + E
Sbjct: 424 ENLKNPSAERNSADALLREVEE 445
>At4g16155.1 68417.m02451 dihydrolipoamide dehydrogenase 2,
plastidic / lipoamide dehydrogenase 2 (PTLPD2) identical
to plastidic lipoamide dehydrogenase from Arabidopsis
thaliana [gi:7159284]
Length = 567
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/73 (19%), Positives = 31/73 (42%)
Frame = +3
Query: 54 MVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLI 233
+++ ++ ++ V + V G+ + T A ++ P W + G+ D+
Sbjct: 211 IITGKDIIIATGSVPFVPKGIEVDGKTVITSDHALKLESVPDWIAIVGSGYIGLEFSDVY 270
Query: 234 TNIGSGVVLLRPL 272
T +GS V + L
Sbjct: 271 TALGSEVTFIEAL 283
>At1g29120.2 68414.m03565 expressed protein
Length = 455
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +3
Query: 33 LARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEP 176
LA S + S+ +A +YSA + DVAV+ S +L+ +EP
Sbjct: 176 LAHSLGGLFSRHAVAVLYSAAMAQVSDVAVSQSGNSNLLRGRIAGLEP 223
>At1g29120.1 68414.m03564 expressed protein
Length = 455
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +3
Query: 33 LARSKLKMVSKAELACVYSALILVDDDVAVTGEKISTILKAAAVDVEP 176
LA S + S+ +A +YSA + DVAV+ S +L+ +EP
Sbjct: 176 LAHSLGGLFSRHAVAVLYSAAMAQVSDVAVSQSGNSNLLRGRIAGLEP 223
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,256,012
Number of Sequences: 28952
Number of extensions: 141942
Number of successful extensions: 368
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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