BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS20809 (764 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_7742| Best HMM Match : HEAT (HMM E-Value=9e-23) 88 8e-18 SB_34262| Best HMM Match : efhand (HMM E-Value=6.3e-26) 29 4.1 SB_20185| Best HMM Match : F5_F8_type_C (HMM E-Value=1.3e-23) 28 7.2 SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38) 28 9.5 SB_6939| Best HMM Match : PaREP8 (HMM E-Value=3.2) 28 9.5 SB_12567| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5 >SB_7742| Best HMM Match : HEAT (HMM E-Value=9e-23) Length = 940 Score = 87.8 bits (208), Expect = 8e-18 Identities = 36/73 (49%), Positives = 53/73 (72%) Frame = +3 Query: 285 LRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQDPNIKEAGIRMFTSVPGVFGN 464 +R+K+CD VSEL+++ +DDDG N W E L+F+F C ++ +KE+ + +F S PGVFGN Sbjct: 74 VRKKICDAVSELSKSFLDDDGYNHWQELLKFLFECCNSPRAELKESALNIFCSFPGVFGN 133 Query: 465 RQTENLDVIKGML 503 +Q L+VIK ML Sbjct: 134 QQDHYLNVIKQML 146 Score = 42.3 bits (95), Expect = 4e-04 Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 1/80 (1%) Frame = +2 Query: 527 SMALRTQAVKAVGAFILLHDKEPIIQKHFSDVLLPLMQVIVLSIEAADDDSALKV-LIEL 703 S A+R A +A AFI E Q+ F +++ ++Q + S A+ DD+ LK LIEL Sbjct: 155 SQAVRFVAARASCAFITDQVGEAK-QRQFVELVPGIIQTVRESALASGDDAVLKSGLIEL 213 Query: 704 AESTPKFLRPQLETIFQVCI 763 AE+ PK LR LE + + + Sbjct: 214 AENCPKLLRSNLEPLLNLML 233 Score = 27.9 bits (59), Expect(2) = 0.025 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +1 Query: 1 QFYQLLNTLLSTDNDIRSQAE 63 QF L+ L+S DND R+QAE Sbjct: 7 QFEALIGQLMSPDNDTRNQAE 27 Score = 27.5 bits (58), Expect(2) = 0.025 Identities = 12/16 (75%), Positives = 15/16 (93%) Frame = +1 Query: 142 DVRQTAAVLLRRLFSA 189 +VRQ AAVLLRR+F+A Sbjct: 27 EVRQMAAVLLRRIFTA 42 >SB_34262| Best HMM Match : efhand (HMM E-Value=6.3e-26) Length = 354 Score = 29.1 bits (62), Expect = 4.1 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%) Frame = +3 Query: 294 KVCDVVSELARNHIDDDGNN--QWPEFLQFMFTCASAQDPN 410 ++ D+++++A +D DGN +PEFLQ M DP+ Sbjct: 249 ELMDMMNQIAFLFVDSDGNGAIDFPEFLQLMTKNLQDADPD 289 >SB_20185| Best HMM Match : F5_F8_type_C (HMM E-Value=1.3e-23) Length = 470 Score = 28.3 bits (60), Expect = 7.2 Identities = 19/64 (29%), Positives = 29/64 (45%) Frame = -3 Query: 744 VSNWGRRNLGVDSANSMSTFNAESSSAASIDRTITCIKGRRTSLKCFCMMGSLSCSSIKA 565 VS RNLG + + + + + + + T+ R TSL CF + G L C I+ Sbjct: 18 VSASSTRNLGYKPSFARIGRHYGNGAWCAANDTLGEYLQRATSLVCFVIRGPLVCPDIRG 77 Query: 564 PTAL 553 P L Sbjct: 78 PLDL 81 >SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38) Length = 525 Score = 27.9 bits (59), Expect = 9.5 Identities = 21/62 (33%), Positives = 31/62 (50%) Frame = -3 Query: 339 HQYDS*PVQRLHHKPFFVSTGKDPFEG*EQLFSEHCPLLKWQFREELKEFCTK*SS*QHG 160 H+Y PVQR + K F+ T + ++++ HC +L Q R + K CTK Q Sbjct: 201 HKYKLSPVQRFNLKAFYFETFRT-----DEVYL-HCEVLVCQ-RSDKKSRCTKGCPYQRR 253 Query: 159 RR 154 RR Sbjct: 254 RR 255 >SB_6939| Best HMM Match : PaREP8 (HMM E-Value=3.2) Length = 256 Score = 27.9 bits (59), Expect = 9.5 Identities = 14/27 (51%), Positives = 19/27 (70%) Frame = -1 Query: 389 TGKHELQELRPLVVAIVINMIPSQFRD 309 TG++ L LRPL+V +V N PS+F D Sbjct: 74 TGQNLLSLLRPLIVCVVSN--PSKFTD 98 >SB_12567| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 150 Score = 27.9 bits (59), Expect = 9.5 Identities = 19/54 (35%), Positives = 26/54 (48%) Frame = +2 Query: 443 CTRCIWKSSD*KLGCDKRHVNIALQPNESMALRTQAVKAVGAFILLHDKEPIIQ 604 C C S+D + D+ H IA E + AVK GAF + DK P++Q Sbjct: 6 CENC---STDFSIYGDREHRKIAQDGEEVLG---NAVKFCGAFYHVPDKVPVLQ 53 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 22,750,010 Number of Sequences: 59808 Number of extensions: 443517 Number of successful extensions: 1212 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 1145 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1212 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2072022557 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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