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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20809
         (764 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7742| Best HMM Match : HEAT (HMM E-Value=9e-23)                     88   8e-18
SB_34262| Best HMM Match : efhand (HMM E-Value=6.3e-26)                29   4.1  
SB_20185| Best HMM Match : F5_F8_type_C (HMM E-Value=1.3e-23)          28   7.2  
SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)        28   9.5  
SB_6939| Best HMM Match : PaREP8 (HMM E-Value=3.2)                     28   9.5  
SB_12567| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_7742| Best HMM Match : HEAT (HMM E-Value=9e-23)
          Length = 940

 Score = 87.8 bits (208), Expect = 8e-18
 Identities = 36/73 (49%), Positives = 53/73 (72%)
 Frame = +3

Query: 285 LRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQDPNIKEAGIRMFTSVPGVFGN 464
           +R+K+CD VSEL+++ +DDDG N W E L+F+F C ++    +KE+ + +F S PGVFGN
Sbjct: 74  VRKKICDAVSELSKSFLDDDGYNHWQELLKFLFECCNSPRAELKESALNIFCSFPGVFGN 133

Query: 465 RQTENLDVIKGML 503
           +Q   L+VIK ML
Sbjct: 134 QQDHYLNVIKQML 146



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
 Frame = +2

Query: 527 SMALRTQAVKAVGAFILLHDKEPIIQKHFSDVLLPLMQVIVLSIEAADDDSALKV-LIEL 703
           S A+R  A +A  AFI     E   Q+ F +++  ++Q +  S  A+ DD+ LK  LIEL
Sbjct: 155 SQAVRFVAARASCAFITDQVGEAK-QRQFVELVPGIIQTVRESALASGDDAVLKSGLIEL 213

Query: 704 AESTPKFLRPQLETIFQVCI 763
           AE+ PK LR  LE +  + +
Sbjct: 214 AENCPKLLRSNLEPLLNLML 233



 Score = 27.9 bits (59), Expect(2) = 0.025
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 1  QFYQLLNTLLSTDNDIRSQAE 63
          QF  L+  L+S DND R+QAE
Sbjct: 7  QFEALIGQLMSPDNDTRNQAE 27



 Score = 27.5 bits (58), Expect(2) = 0.025
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = +1

Query: 142 DVRQTAAVLLRRLFSA 189
           +VRQ AAVLLRR+F+A
Sbjct: 27  EVRQMAAVLLRRIFTA 42


>SB_34262| Best HMM Match : efhand (HMM E-Value=6.3e-26)
          Length = 354

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +3

Query: 294 KVCDVVSELARNHIDDDGNN--QWPEFLQFMFTCASAQDPN 410
           ++ D+++++A   +D DGN    +PEFLQ M       DP+
Sbjct: 249 ELMDMMNQIAFLFVDSDGNGAIDFPEFLQLMTKNLQDADPD 289


>SB_20185| Best HMM Match : F5_F8_type_C (HMM E-Value=1.3e-23)
          Length = 470

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = -3

Query: 744 VSNWGRRNLGVDSANSMSTFNAESSSAASIDRTITCIKGRRTSLKCFCMMGSLSCSSIKA 565
           VS    RNLG   + +    +  + +  + + T+     R TSL CF + G L C  I+ 
Sbjct: 18  VSASSTRNLGYKPSFARIGRHYGNGAWCAANDTLGEYLQRATSLVCFVIRGPLVCPDIRG 77

Query: 564 PTAL 553
           P  L
Sbjct: 78  PLDL 81


>SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)
          Length = 525

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 21/62 (33%), Positives = 31/62 (50%)
 Frame = -3

Query: 339 HQYDS*PVQRLHHKPFFVSTGKDPFEG*EQLFSEHCPLLKWQFREELKEFCTK*SS*QHG 160
           H+Y   PVQR + K F+  T +      ++++  HC +L  Q R + K  CTK    Q  
Sbjct: 201 HKYKLSPVQRFNLKAFYFETFRT-----DEVYL-HCEVLVCQ-RSDKKSRCTKGCPYQRR 253

Query: 159 RR 154
           RR
Sbjct: 254 RR 255


>SB_6939| Best HMM Match : PaREP8 (HMM E-Value=3.2)
          Length = 256

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -1

Query: 389 TGKHELQELRPLVVAIVINMIPSQFRD 309
           TG++ L  LRPL+V +V N  PS+F D
Sbjct: 74  TGQNLLSLLRPLIVCVVSN--PSKFTD 98


>SB_12567| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +2

Query: 443 CTRCIWKSSD*KLGCDKRHVNIALQPNESMALRTQAVKAVGAFILLHDKEPIIQ 604
           C  C   S+D  +  D+ H  IA    E +     AVK  GAF  + DK P++Q
Sbjct: 6   CENC---STDFSIYGDREHRKIAQDGEEVLG---NAVKFCGAFYHVPDKVPVLQ 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,750,010
Number of Sequences: 59808
Number of extensions: 443517
Number of successful extensions: 1212
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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