Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20765
(754 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 62 5e-10
SB_5442| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 8e-09
SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0) 54 2e-07
SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 3e-07
SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34) 53 3e-07
SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0) 53 3e-07
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45) 51 1e-06
SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0) 48 8e-06
SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0) 46 2e-05
SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44) 46 3e-05
SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0) 46 3e-05
SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22) 44 2e-04
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0) 43 2e-04
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0) 43 3e-04
SB_22047| Best HMM Match : Mito_carr (HMM E-Value=0) 42 4e-04
SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0) 42 7e-04
SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_29345| Best HMM Match : Mito_carr (HMM E-Value=0) 41 0.001
SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0) 38 0.012
SB_27933| Best HMM Match : Mito_carr (HMM E-Value=6.9e-17) 37 0.015
SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0) 33 0.19
SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42) 33 0.25
SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.43
SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0) 32 0.43
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0) 31 0.76
SB_32253| Best HMM Match : Mito_carr (HMM E-Value=1.6e-31) 31 1.3
SB_22077| Best HMM Match : MIP (HMM E-Value=0) 30 2.3
SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014) 30 2.3
SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12) 30 2.3
SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13) 29 4.1
SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011) 29 5.4
SB_52314| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 62.1 bits (144), Expect = 5e-10
Identities = 35/78 (44%), Positives = 49/78 (62%), Gaps = 5/78 (6%)
Frame = +1
Query: 37 GAASVFGNTPIDVVKTRMQG----LEAAK-YKNTVDCFVKTWKHEGPLAFYKGTVPRLSR 201
GA +V+ PID+VKTRMQ LEA K YKN++DCF K ++EGP+ Y+G +P+L
Sbjct: 927 GATAVY---PIDLVKTRMQNQRAVLEAEKVYKNSIDCFFKVVRNEGPIGLYRGLLPQLLG 983
Query: 202 VVFDVAITFTIYDSIMDV 255
V + AI T D + +
Sbjct: 984 VSPEKAIKLTTNDFVRGI 1001
>SB_5442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 58.0 bits (134), Expect = 8e-09
Identities = 27/80 (33%), Positives = 41/80 (51%)
Frame = +1
Query: 25 GGIAGAASVFGNTPIDVVKTRMQGLEAAKYKNTVDCFVKTWKHEGPLAFYKGTVPRLSRV 204
G + G A VF P D +K +MQ + KN +DC +KT+K EG Y GT+P L+
Sbjct: 16 GAMGGTACVFAGQPFDTIKVKMQTFPSMS-KNALDCGIKTFKQEGFKGLYAGTIPSLAAN 74
Query: 205 VFDVAITFTIYDSIMDVSTT 264
+ + + F Y + + T
Sbjct: 75 IAENSFLFLFYGQCLSLIKT 94
>SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 306
Score = 53.6 bits (123), Expect = 2e-07
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Frame = +1
Query: 31 IAGAASVFGNTPIDVVKTR-MQGLEAAK-----YKNTVDCFVKTWKHEGPLAFYKGTVPR 192
+AG + +P+D+V+TR M + K Y+ T+DC KT +HEG LA YKG P
Sbjct: 220 VAGFVATCVASPVDIVRTRFMTQPKDTKGRPLVYQGTLDCIYKTVRHEGILALYKGFFPN 279
Query: 193 LSRVVFDVAITFTIYDSI 246
+R D I F +Y+ +
Sbjct: 280 WTRTGLDTIIIFFVYERL 297
>SB_16884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 300
Score = 52.8 bits (121), Expect = 3e-07
Identities = 23/34 (67%), Positives = 29/34 (85%)
Frame = +1
Query: 19 LFGGIAGAASVFGNTPIDVVKTRMQGLEAAKYKN 120
L GG+AGAASVFGNTP+DVVKTRMQ L + +++
Sbjct: 240 LIGGVAGAASVFGNTPVDVVKTRMQLLNSRLFRS 273
Score = 45.2 bits (102), Expect = 6e-05
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Frame = +1
Query: 19 LFGGIAGAASVFGNTPIDVVKTRMQGLE-AAK--YKNTVDCFVKTWKHEGPLAFYKGTVP 189
L GGIAG + P + VKT++Q E AAK Y+ +DC KT K G L Y+G
Sbjct: 45 LAGGIAGGLEICCTFPTEYVKTQLQLDEKAAKPIYRGPIDCVKKTVKGHGVLGLYRGLSS 104
Query: 190 RLSRVVFDVAITFTIYD 240
L V ++ F +++
Sbjct: 105 LLYGSVPKASVRFAVFE 121
>SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34)
Length = 302
Score = 52.8 bits (121), Expect = 3e-07
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Frame = +1
Query: 7 YIVGLFGGIAGAASVFGNTPIDVVKTRMQGLEAAK----YKNTVDCFVKTWKHEGPLAFY 174
Y +G G +AG + P+DV+KTR+Q L + Y +DC K + +EG AFY
Sbjct: 207 YCLGA-GCLAGMTASVAVNPLDVIKTRLQLLNRPQGEPNYNGIIDCAKKIYSNEGLAAFY 265
Query: 175 KGTVPRLSRVVFDVAITFTIY 237
KG VPR+ + I T+Y
Sbjct: 266 KGAVPRMIVIAPLFGIAQTVY 286
>SB_3139| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 276
Score = 52.8 bits (121), Expect = 3e-07
Identities = 26/60 (43%), Positives = 35/60 (58%)
Frame = +1
Query: 1 PKYIVGLFGGIAGAASVFGNTPIDVVKTRMQGLEAAKYKNTVDCFVKTWKHEGPLAFYKG 180
P + V FG AG + +P+DVVKTR A YK+ +DC V+ +KH G A+YKG
Sbjct: 219 PLHFVSAFG--AGFVTTCVASPVDVVKTRYMNSPANTYKSGIDCAVQLFKHNGIFAYYKG 276
Score = 36.7 bits (81), Expect = 0.020
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +1
Query: 1 PKYIVGLFGGIA-GAASVFGNTPIDVVKTRMQGLEAAKY-KNTVDCFVKTWKHEGPLAFY 174
PK + + I G +V P +VVK R Q +A +Y T+ + + ++EG +
Sbjct: 122 PKILKKIAASITTGIMAVSVAQPTEVVKIRFQA-DAGRYTSGTMGTYAEIARNEGMKGLW 180
Query: 175 KGTVPRLSRVVFDVAITFTIYDSI 246
KG P ++R+ +YDSI
Sbjct: 181 KGVFPNMARLCTVNVTELVVYDSI 204
Score = 31.9 bits (69), Expect = 0.57
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 16/89 (17%)
Frame = +1
Query: 28 GIAGAASVFGNTPIDVVKTRMQ-------------GLEA---AKYKNTVDCFVKTWKHEG 159
GIA + + PID K R+Q G+ A Y+ + V +K EG
Sbjct: 22 GIAASIAEAATIPIDTAKVRLQIQGESAVMASIAQGVRTTHDAHYRGMLGTMVTLFKTEG 81
Query: 160 PLAFYKGTVPRLSRVVFDVAITFTIYDSI 246
YKG +P + R + +I +YD +
Sbjct: 82 MKTMYKGLIPGIHRQLCFASIRIGLYDQV 110
>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
Length = 773
Score = 50.8 bits (116), Expect = 1e-06
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Frame = +1
Query: 25 GGIAGAASVFGNTPIDVVKTRMQ---GLEAAKYKNTVDCFVKTWKHEGPLAFYKGTVPRL 195
G +AGA + G P+DVV+ RMQ G KY +T D F + EG + +KG P L
Sbjct: 688 GAVAGAVAQSGTYPLDVVRRRMQMERGEGMFKYSSTWDGFKVIVRSEGFIGLFKGMWPNL 747
Query: 196 SRVVFDVAITFTIYD 240
+V + I F +Y+
Sbjct: 748 LKVAPTIGIQFAVYE 762
Score = 31.5 bits (68), Expect = 0.76
Identities = 19/77 (24%), Positives = 37/77 (48%)
Frame = +1
Query: 10 IVGLFGGIAGAASVFGNTPIDVVKTRMQGLEAAKYKNTVDCFVKTWKHEGPLAFYKGTVP 189
++G+ GG G S++ T ++ + ++ AKY K ++ EG ++KG
Sbjct: 562 LLGIMGG--GVTSLYIFTILNSFQIQVTN---AKYSGVGGTLAKIYRDEGLYGYFKGNGT 616
Query: 190 RLSRVVFDVAITFTIYD 240
+ R+V A+ F Y+
Sbjct: 617 NIVRIVPYTAVQFAAYE 633
>SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 274
Score = 48.0 bits (109), Expect = 8e-06
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Frame = +1
Query: 25 GGIAGAASVFGNTPIDVVKTRMQG---LEAAKYKNTVDCFVKTWKHEGPLAFYKGTVPRL 195
GG AG S P DV+K+R+Q L +YK +DC ++++K EG + F +G P L
Sbjct: 139 GGFAGVVSWASTFPFDVIKSRIQADGNLGKFRYKGMMDCALQSYKEEGMIVFTRGIWPTL 198
Query: 196 SR 201
R
Sbjct: 199 LR 200
Score = 43.6 bits (98), Expect = 2e-04
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Frame = +1
Query: 13 VGLFGGIAGAASVFGNTPIDVVKTRMQGLEAAK------YKNTVDCFVKTWKHEGPLAFY 174
+ G +AG A V P+D+VK ++Q AK Y+ VDC VK ++ G +
Sbjct: 36 IAFAGSVAGLAQVPLIAPVDLVKIKLQMQTEAKRSTRSVYRGPVDCLVKLYRSRGLAGCF 95
Query: 175 KGTVPRLSRVVFDVAITFTIYDSIMD 252
+G R + A+ F +Y+ + D
Sbjct: 96 QGNTVTAVRDIPGFAVYFGVYELLCD 121
>SB_54004| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 309
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Frame = +1
Query: 25 GGIAGAASVFGNTPIDVVKTRMQGL------EAAKYKNTVDCFVKTWKHEGPLAFYKGTV 186
G ++G P+D++K R+Q + E A +K +DCF+KT + EG YKG +
Sbjct: 27 GSVSGMLGCAAGQPLDLLKVRLQAMNQVKPGETAPFKGAMDCFMKTVRLEGLRGLYKGML 86
Query: 187 PRLSRVVFDVAITF 228
L A+TF
Sbjct: 87 SPLLMATPSTALTF 100
Score = 45.2 bits (102), Expect = 6e-05
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +1
Query: 25 GGIAGAASVFGNTPIDVVKTRMQGLEAAKY-KNTVDCFVKTWKHEGPLAFYKGTVPRLSR 201
GGIAG A P+D++KTR+Q +Y + D + +EGP+A YKG VP + R
Sbjct: 226 GGIAGLALWGLMFPVDMLKTRVQIAPMGRYPRGARDVLKEVLCNEGPMALYKGYVPGMIR 285
Query: 202 VVFDVAITFTIYDSIM 249
V F Y+ M
Sbjct: 286 AVVTHCGLFIGYEFTM 301
>SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44)
Length = 192
Score = 46.0 bits (104), Expect = 3e-05
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Frame = +1
Query: 10 IVGLFGG--IAGAASVFGNTPIDVVKTRMQGLEAA----KYKNTVDCFVKTWKHEGPLAF 171
IV FG I+G A+ + P+D+ KTR+Q + +YK T+D + ++EG A
Sbjct: 93 IVCHFGASMISGLATTVASMPVDIAKTRIQNMRIIDGKPEYKGTMDVLARIVRNEGVFAL 152
Query: 172 YKGTVPRLSRVVFDVAITFTIYDSI 246
+KG P R+ +TF + +
Sbjct: 153 WKGFTPYYFRIGPHTVLTFIFLEQL 177
>SB_46795| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 328
Score = 46.0 bits (104), Expect = 3e-05
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 10/78 (12%)
Frame = +1
Query: 1 PKYIV---GLFGGIAGAASVFGNTPIDVVKTRMQGLEAAK------YKNTVDCFVKTWKH 153
PK+ V + G AGAA+ P+D +K R+Q + K YKN+ DCF K ++
Sbjct: 34 PKFSVLKNSIAGSAAGAAANLVGFPLDTIKVRLQAMPLPKPGEPWMYKNSFDCFFKIIRN 93
Query: 154 EGPLAFYKG-TVPRLSRV 204
EG ++G TVP L+ +
Sbjct: 94 EGVYYLFRGVTVPILNSI 111
Score = 37.9 bits (84), Expect = 0.009
Identities = 25/72 (34%), Positives = 31/72 (43%)
Frame = +1
Query: 25 GGIAGAASVFGNTPIDVVKTRMQGLEAAKYKNTVDCFVKTWKHEGPLAFYKGTVPRLSRV 204
G IAG A P DV+KTR Q +Y +D ++EG A Y G L R
Sbjct: 244 GAIAGMAYWTAGLPADVLKTRYQTAPPGRYGRVLDVLRTLVRYEGFTALYTGFGAILIRA 303
Query: 205 VFDVAITFTIYD 240
+ A F YD
Sbjct: 304 LPVNAAFFLAYD 315
Score = 34.7 bits (76), Expect = 0.082
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +1
Query: 25 GGIAGAASVFGNTPIDVVKTRMQ---GLEAAKYKNTVDCFVKTWKHEGPLAFYKG 180
G IAG A+ F TP+D VK +Q + Y VDC + ++ G YKG
Sbjct: 144 GMIAGVATSFVLTPLDRVKCILQIEKAFGGSSYGGPVDCLRRIYREAGVRGVYKG 198
>SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22)
Length = 95
Score = 43.6 bits (98), Expect = 2e-04
Identities = 18/60 (30%), Positives = 34/60 (56%)
Frame = +1
Query: 64 PIDVVKTRMQGLEAAKYKNTVDCFVKTWKHEGPLAFYKGTVPRLSRVVFDVAITFTIYDS 243
P+D+V+ R+ + KY ++ F + ++ EG FY+G VP L ++ I+F Y++
Sbjct: 9 PLDMVRARLAITQKKKYTGLINAFTRIYRDEGMRTFYRGYVPTLIGIMPYAGISFFTYET 68
>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 43.6 bits (98), Expect = 2e-04
Identities = 21/76 (27%), Positives = 40/76 (52%)
Frame = +1
Query: 19 LFGGIAGAASVFGNTPIDVVKTRMQGLEAAKYKNTVDCFVKTWKHEGPLAFYKGTVPRLS 198
L G +AG AS P++V+KTR+ + +Y+ + ++ EG +FY+G P L
Sbjct: 235 LAGSMAGVASQTSIYPLEVLKTRLAIRKTGQYRGLLHAASVIYQKEGIRSFYRGLFPSLL 294
Query: 199 RVVFDVAITFTIYDSI 246
++ I +Y+++
Sbjct: 295 GIIPYAGIDLAVYETL 310
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Frame = +1
Query: 25 GGIAGAASVFGNTPIDVVKTRMQGLEAAKY----KNTVDCFVKTWKHEGPLAFYKGTVPR 192
G + + P+ +V+TR+Q K N V K +G Y+G P
Sbjct: 334 GTASSTCGQLASYPLSLVRTRLQAQAREKGGGQGDNMVSVLRKIITEDGFKGLYRGLAPN 393
Query: 193 LSRVVFDVAITFTIYDSI 246
+V V+I++ +Y+++
Sbjct: 394 FLKVAPAVSISYVVYENL 411
>SB_27773| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 203
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Frame = +1
Query: 31 IAGA-ASVFGN---TPIDVVKTRMQGLEAAKYKNTVDCFVKTWKHEGPLAFYKGTVPRLS 198
+AGA A+VF + PI+V+K R+Q + + Y+ + C +K EG AFY+ +LS
Sbjct: 2 LAGACATVFHDGAMNPIEVIKQRLQ-MYGSPYRGVIHCATSVFKEEGIRAFYRSYTTQLS 60
Query: 199 RVVFDVAITFTIYD 240
+ + FT+Y+
Sbjct: 61 MNIPFQTLHFTVYE 74
>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 42.7 bits (96), Expect = 3e-04
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +1
Query: 19 LFGGIAGAASVFGNTPIDVVKTRMQ-GLEAAKYKNTVDCFVKTWKHEGPLAFYKGTVPRL 195
L GGIAGA S +P++ VK +Q ++ K+K + ++ K EG L ++KG +
Sbjct: 39 LAGGIAGAVSRTSVSPLERVKILLQIQVKNPKFKGVLPTLIQIGKEEGILGYFKGNGTNV 98
Query: 196 SRVVFDVAITFTIYD 240
R+ A+ F Y+
Sbjct: 99 IRIFPYSAVQFAAYE 113
Score = 41.1 bits (92), Expect = 0.001
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +1
Query: 25 GGIAGAASVFGNTPIDVVKTRMQ--GLEA-AKYKNTVDCFVKTWKHEGPLAFYKGTVPRL 195
G +AGA S P+DVV+ RMQ G+ A YK+T+ F K EG YKG P +
Sbjct: 168 GSLAGAVSQTATYPLDVVRRRMQMKGIRADFAYKSTLHAFSSIVKLEGFRGLYKGMWPNI 227
>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 264
Score = 42.7 bits (96), Expect = 3e-04
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Frame = +1
Query: 10 IVGLF--GGIAGAASVFGNTPIDVVKTRMQGLEAA----KYKNTVDCFVKTWKHEG-PLA 168
I+G F GG+AGA S P+DVV+ RMQ A KY ++ V +K +G
Sbjct: 172 IIGGFVCGGVAGAVSQTIAYPLDVVRRRMQLAGAVPDGHKYNTCINTLVNVYKDDGIRRG 231
Query: 169 FYKGTVPRLSRVVFDVAITFTIYD 240
Y+G RV VAI F +Y+
Sbjct: 232 LYRGLSINYLRVCPQVAIMFGVYE 255
>SB_22047| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 421
Score = 42.3 bits (95), Expect = 4e-04
Identities = 20/58 (34%), Positives = 34/58 (58%)
Frame = +1
Query: 34 AGAASVFGNTPIDVVKTRMQGLEAAKYKNTVDCFVKTWKHEGPLAFYKGTVPRLSRVV 207
+G + +TP DV+KTR+ + Y+ V+CF+ EG L+ YKG +P +R++
Sbjct: 310 SGLVAATISTPADVIKTRIMN-NPSGYQGAVECFMLAVHREGLLSLYKGWLPTWTRML 366
Score = 27.9 bits (59), Expect = 9.4
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Frame = +1
Query: 25 GGIAGAASVFGNTPIDVVKTRMQ--GLEAAKY-----KNTVDCFVKTWKHEGPLAFYKGT 183
G AGA F ++P D+VK +MQ G + Y + T F G +KG
Sbjct: 138 GMSAGALGQFISSPTDLVKVQMQMEGRRLSFYPISSVRGTFHAFRNIVDKYGFRGLWKGW 197
Query: 184 VPRLSRVVFDVAITFTIYDSI 246
+P + R T YD++
Sbjct: 198 LPNVQRAALVNMGDLTTYDTV 218
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +1
Query: 34 AGAASVFGNTPIDVVKTRMQGLEAAKYKNTVDCFV 138
+G + +TP DV+KTR+ + Y+ V+CF+
Sbjct: 242 SGLVAATISTPADVIKTRIMN-NPSGYQGAVECFM 275
>SB_51922| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 200
Score = 41.5 bits (93), Expect = 7e-04
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Frame = +1
Query: 19 LFGGIAGAASVFGNTPIDVVKTRMQ----GLEAAKYKNTVDCFVKTWKHEG-PLAFYKGT 183
L G +AGA S P+DVV+ RMQ + KY ++ F+ + +G Y+G
Sbjct: 111 LCGALAGATSQTLAYPLDVVRRRMQLAGTVADGHKYSTCINTFISVYTEDGIRRGLYRGL 170
Query: 184 VPRLSRVVFDVAITFTIYDSIMDVST 261
RV VA+ F +Y+ + + T
Sbjct: 171 SINYLRVCPQVAVMFAVYEVVKQLLT 196
Score = 31.9 bits (69), Expect = 0.57
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = +1
Query: 25 GGIAGAASVFGNTPIDVVKTRM--QGLEAAKYKNTVDCFVKTWKHEGPL-AFYKGTVPRL 195
GG+AG + P+D+V++R+ Q + Y + + EG + A Y+G P
Sbjct: 5 GGLAGLTACSCTYPLDIVRSRLAFQVADEHTYCGICQTVKQIFMTEGGMVALYRGFTPTS 64
Query: 196 SRVVFDVAITFTIYDSIMD 252
++ V I F ++S D
Sbjct: 65 LSMIPAVGIGFYAFESFKD 83
>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 41.1 bits (92), Expect = 0.001
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 11/84 (13%)
Frame = +1
Query: 28 GIAGAASVFGNT---PIDVVKTRMQG----LEAAK----YKNTVDCFVKTWKHEGPLAFY 174
G++GAA++ T PI+ VK +Q L+A + YK +DC +T++ EG L+F+
Sbjct: 14 GLSGAAAIISKTAAAPIERVKLLVQNQDEMLKAGRLDHPYKGVIDCTSRTYRSEGFLSFW 73
Query: 175 KGTVPRLSRVVFDVAITFTIYDSI 246
+G + R A+ F D +
Sbjct: 74 RGNLANCIRYFPTQALNFAFKDQV 97
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +1
Query: 64 PIDVVKTRMQGL--EAAKYKNTVDCFVKTWKHEGPLAFYKGTVPRLSR 201
PID ++ RM EA KYK ++DC ++ K EG ++ KG + R
Sbjct: 231 PIDTIRRRMMMTSGEAVKYKGSIDCTIQILKKEGAMSLMKGAGANILR 278
Score = 31.9 bits (69), Expect = 0.57
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Frame = +1
Query: 25 GGIAGAASVFGNTPIDVVKTRMQ-----GLEAAK--YKNTVDCFVKTWKHEGPLAFYKGT 183
GG AGA S+F +D +TR+ G + + + +D + KT +G + Y+G
Sbjct: 120 GGAAGAMSLFFVYSLDYCRTRLANDAKVGKKGGERQFNGMIDVYKKTIASDGLVGLYRGF 179
Query: 184 VPRLSRVVFDVAITFTIYDSIMDV 255
V ++ F +YD++ +
Sbjct: 180 VISCVGIIVYRGFYFGLYDTLKPI 203
>SB_29345| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 313
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Frame = +1
Query: 25 GGIAGAASVFGNTPIDVVKTRMQGLEAAK------YKNTVDCFVKTWKHEGPLAFYKGTV 186
GG G + P+D +K R+Q + K + T DC +KT ++EG YKG
Sbjct: 33 GGFGGVCCIATGHPLDTIKVRLQTMPRPKPGEKPMFTGTFDCAMKTIRNEGFFGLYKGMA 92
Query: 187 PRLSRVVFDVAITF 228
++ V AI F
Sbjct: 93 APITGVTPIFAICF 106
Score = 31.5 bits (68), Expect = 0.76
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 109 KYKNTVDCFVKTWKHEGPLAFYKGTVPRLSRVVFDVAITFTIYDSIM 249
KYK +DC + + G YKG L R V A+ F Y+ +M
Sbjct: 230 KYKGPIDCARQIYAQNGIRGVYKGVCATLLRDVPGTAMYFLSYEYLM 276
>SB_26166| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 612
Score = 37.5 bits (83), Expect = 0.012
Identities = 24/74 (32%), Positives = 36/74 (48%)
Frame = +1
Query: 25 GGIAGAASVFGNTPIDVVKTRMQGLEAAKYKNTVDCFVKTWKHEGPLAFYKGTVPRLSRV 204
G +AGA + P DVVKTR+Q + Y + V + G ++G VPR R
Sbjct: 530 GIMAGAMASVVTQPADVVKTRLQ-MNPYMYPSNRAAVVAIIEAGGIEGLFRGLVPRTVRR 588
Query: 205 VFDVAITFTIYDSI 246
A+ +TIY+ +
Sbjct: 589 TLMSAMAWTIYEEV 602
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +1
Query: 64 PIDVVKTRMQGLEAAKYKNTVDCFVKTWKHEGPLAFYKGTVPRLSR 201
P+ VVKTR + Y + V W +EG Y G V ++R
Sbjct: 449 PVTVVKTRYESGNF-NYTSMRQALVSIWTNEGGRGLYSGLVATVAR 493
>SB_27933| Best HMM Match : Mito_carr (HMM E-Value=6.9e-17)
Length = 187
Score = 37.1 bits (82), Expect = 0.015
Identities = 37/143 (25%), Positives = 55/143 (38%), Gaps = 8/143 (5%)
Frame = +1
Query: 19 LFGGIAGAASVFGNTPIDVVKTRMQ--------GLEAAKYKNTVDCFVKTWKHEGPLAFY 174
+ G A + + F P++VVKTRMQ G + Y+N K+EG LA
Sbjct: 9 VLGATAASGACFFTNPLEVVKTRMQLQGELKSRGTYSVYYRNVFHASYTIAKYEGILAMQ 68
Query: 175 KGTVPRLSRVVFDVAITFTIYDSIMDVSTTCXXXXXXXXXECNEETAEINTNHTDNFTGG 354
KG P L V Y I + T +C A ++ + T
Sbjct: 69 KGLFPALIYQVIMNGTRLGSYQIITNFGLTKDADGKPVFYKCLIAGA-MSVKDPASST-V 126
Query: 355 RTGESARVGTTTLPVSAVKQ*CV 423
R+ S+R+ T T +S C+
Sbjct: 127 RSANSSRIPTPTQRISKAIMGCI 149
>SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 34.3 bits (75), Expect = 0.11
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Frame = +1
Query: 25 GGIAGAASVFGNTPIDVVKTRMQ--GLEAAK--------YKNTVDCFVKTWKHEGPLAFY 174
G ++G S P D++K R+Q G E A+ Y DCF K EG + +
Sbjct: 36 GALSGMISKAVILPFDIIKKRIQVQGFEEARQSFGRVQQYDGVKDCFRTILKEEGAMGLF 95
Query: 175 KGTVPRLSRV 204
KG P +V
Sbjct: 96 KGLAPSTLKV 105
>SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 434
Score = 33.5 bits (73), Expect = 0.19
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 5/77 (6%)
Frame = +1
Query: 25 GGIAGAASVFGNTPIDVVKTR-----MQGLEAAKYKNTVDCFVKTWKHEGPLAFYKGTVP 189
G AG + P+DVV+ R M + Y V + EG YKG VP
Sbjct: 35 GATAGVVATASTHPLDVVRARLTVQDMSTRSISNYTGIVSALRRIHIEEGIRGLYKGLVP 94
Query: 190 RLSRVVFDVAITFTIYD 240
L + + + ++YD
Sbjct: 95 SLVSIAPFLGVQQSVYD 111
Score = 31.9 bits (69), Expect = 0.57
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Frame = +1
Query: 25 GGIAGAASVFGNTPIDVVKTRMQ---GLEAAKYKNTVDCFVKTWKHEGPLAFYKGTVPRL 195
G IAG + P+DVV+ +MQ G + + ++ WK GP Y G
Sbjct: 133 GAIAGMIAQTVVHPLDVVRRQMQVDRGRSGSITQTSLSALKILWKQGGPRRIYAGLTASY 192
Query: 196 SRVVFDVAITFTIYDSIMDV 255
+V+ A + + D++ V
Sbjct: 193 LKVMPAAATSLLVRDALARV 212
>SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42)
Length = 247
Score = 33.1 bits (72), Expect = 0.25
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +1
Query: 25 GGIAGAASVFGNTPIDVVKTRMQGLEAAKYKNTVDCFVKTWKHEGPLAFYKG 180
G + G V P+D +K R+Q A +D +T K EG YKG
Sbjct: 76 GSVGGVTGVTAGQPLDTIKVRLQASFGA---GPLDMLARTVKTEGVRGLYKG 124
>SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 32.3 bits (70), Expect = 0.43
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = +1
Query: 112 YKNTVDCFVKTWKHEGPLAFYKGTVPRLSRVVFDVAITFTIYDSI 246
+ +++D +K ++EG + ++G P + V + I FT+YD +
Sbjct: 60 FTSSIDALIKIPRYEGLSSLWRGLPPTMVMAVPNTVIYFTLYDQL 104
>SB_17703| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 611
Score = 32.3 bits (70), Expect = 0.43
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Frame = +1
Query: 25 GGIAGAASVFGNTPIDVVKTRMQ-------GLEAAKYKNTVDCFVKTWKHEGPLAFYKGT 183
GGIAG S P+D+VK+ Q G KY DC K + G AF +G
Sbjct: 364 GGIAGTLSWILTYPVDMVKSCYQADGRTNSGKPQYKYNGYADCVKKIYISGGVSAFGQGL 423
Query: 184 VPRLSRVVFDVAITFTI 234
+ + R A T T+
Sbjct: 424 LATILRGFPTNAATLTV 440
>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 375
Score = 31.5 bits (68), Expect = 0.76
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +1
Query: 19 LFGGIAGAASVFGNTPIDVVKTRMQ-GLEAAKYKNTVDCFVKTWKHEGPLAFYKGTVPRL 195
L GG + + +P++VVK Q G + AK + F +K EG AF+KG
Sbjct: 63 LCGGTSAVLARSLTSPLEVVKVLAQVGTQEAK-PGLIRTFASVYKREGIKAFWKGNGVSC 121
Query: 196 SRVVFDVAITFTIYDSIM 249
R+ A+ + ++ I+
Sbjct: 122 IRLFPYSAVQYAAFNRIV 139
Score = 27.9 bits (59), Expect = 9.4
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Frame = +1
Query: 64 PIDVVKTRMQ----GLEAAKYKNTVDCFVKTWKHEGPLAFYKGTVPRLSRVVFDVAITFT 231
P +V+KTR+ A YK + EG LA YKG P + +F
Sbjct: 172 PCEVIKTRLTVQHVNKSNAHYKGMRHALKTILREEGILALYKGVTPSFLGLFPFAGGSFL 231
Query: 232 IYDSIMDVSTT 264
Y + V +T
Sbjct: 232 AYQILDKVDST 242
>SB_32253| Best HMM Match : Mito_carr (HMM E-Value=1.6e-31)
Length = 233
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Frame = +1
Query: 37 GAASVFGNT---PIDVVKTRM----QGLEAAKYKNTVDCFVKTWKHEGPLAFYKGTVPRL 195
G AS+ G T P+D++ ++ QG K K +T+ GP FYKG L
Sbjct: 113 GCASIVGQTITVPVDIISQKLMIQGQGDRKVKLKGARILIRETFHQHGPGGFYKGYFASL 172
Query: 196 SRVVFDVAITFTIY 237
AI + Y
Sbjct: 173 MTYAPSSAIWWASY 186
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 64 PIDVVKTRMQ-GLEAAKYKNTVDCFVKTWKHEGPLAFYKG 180
P +++K R+Q + Y ++D F K + EG YKG
Sbjct: 35 PANLIKIRLQVQRKTTLYNGSLDAFTKVIRTEGVRGLYKG 74
>SB_22077| Best HMM Match : MIP (HMM E-Value=0)
Length = 374
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/23 (52%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
Frame = +1
Query: 7 YIVG-LFGGIAGAASVFGNTPID 72
Y++G + GGIAG+A ++G TP+D
Sbjct: 220 YVIGQVGGGIAGSAMLYGLTPVD 242
>SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014)
Length = 76
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 11/60 (18%)
Frame = +1
Query: 31 IAGAASVFGNT---PIDVVKTRMQG----LEAAK----YKNTVDCFVKTWKHEGPLAFYK 177
++GAA++ T PI+ VK +Q L+A + YK VDC ++T++ EG +F++
Sbjct: 16 LSGAAAIISKTAAAPIERVKLLVQNQDEMLKAGRLSSPYKGVVDCTMRTYRAEGIGSFWR 75
>SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)
Length = 872
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 12/57 (21%)
Frame = -2
Query: 453 LQRLPHPSNRNALLLHG*NRQGG------------GTYPRGLTGPTTSKIVCMISVN 319
+QR P P+ RN++ LHG Q G+ P+G + T+S+ VC I N
Sbjct: 30 VQRRPEPTPRNSIFLHGLRAQTATNFNQPQMPTCTGSSPQGTSHNTSSRSVCKIDEN 86
>SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4538
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = -2
Query: 753 AKYTVNINFKAC-HLENQFEI-NTKHTIAGQMTHFELLHCKCTYRLIAF 613
AKY++ + C + + + E+ +T AG T E++HC CT+ L AF
Sbjct: 3311 AKYSIQVFQSPCKYWDKEREMWSTMGCKAGPQTRLEVVHCVCTH-LTAF 3358
>SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13)
Length = 577
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Frame = +1
Query: 64 PIDVVKTRMQ----GLEAAKYKNTVDCFVKTWKHEGPLAFYKGTVPRL---SRVVFDVAI 222
P +V+KTR+ A YK + EG LA YKG P + V V I
Sbjct: 441 PCEVIKTRLTVQHVNKSNAHYKGMRHALKTILREEGILALYKGVTPSFLACLQAVLGVII 500
Query: 223 TFTIYDSIMDVST 261
++ S++ +T
Sbjct: 501 AENMFRSVITTNT 513
>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
Length = 972
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -1
Query: 634 YVSSYCFCKFYYMTFSYQLIYSYY 563
Y YC+C YY + Y Y YY
Sbjct: 475 YCYYYCYCYCYYYCYYYCYCYCYY 498
Score = 28.3 bits (60), Expect = 7.1
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -1
Query: 622 YCFCKFYYMTFSYQLIYSYY 563
YC+C YY + Y Y YY
Sbjct: 471 YCYCYCYYYCYCYCYYYCYY 490
>SB_52314| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1069
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 25 GGIAGAASVFGNTPIDVVKTRMQ 93
GG+ G+ V P+DV++TR+Q
Sbjct: 733 GGLGGSTGVILTCPLDVIQTRLQ 755
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,108,747
Number of Sequences: 59808
Number of extensions: 424813
Number of successful extensions: 1338
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1292
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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