Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20737
         (432 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)               109   1e-24
SB_16496| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_3365| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.2  
SB_49920| Best HMM Match : MANEC (HMM E-Value=0.73)                    27   5.0  
SB_33032| Best HMM Match : Prothymosin (HMM E-Value=0.78)              27   6.6  

>SB_11396| Best HMM Match : Ribosomal_S2 (HMM E-Value=0)
          Length = 328

 Score =  109 bits (262), Expect = 1e-24
 Identities = 48/71 (67%), Positives = 59/71 (83%)
 Frame = +1

Query: 46  MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVL 225
           MSGGLD+L L EEDV K LAA  HLGA N +FQME YVYKR++DG ++IN+++TWEKL+L
Sbjct: 1   MSGGLDILQLKEEDVVKFLAAGVHLGANNCDFQMEDYVYKRKSDGVNIINVKKTWEKLLL 60

Query: 226 AARAVVAIENP 258
           AAR +V IENP
Sbjct: 61  AARIIVTIENP 71



 Score =  108 bits (260), Expect = 2e-24
 Identities = 49/57 (85%), Positives = 54/57 (94%)
 Frame = +3

Query: 255 PADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 425
           PADV VIS+RP+GQRA+LK+A+HTGATPIAGRFTPG FTNQIQAAFREPRLLIV DP
Sbjct: 71  PADVCVISARPYGQRAILKYASHTGATPIAGRFTPGTFTNQIQAAFREPRLLIVCDP 127


>SB_16496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1275

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 211 EKLVLAARAVVAIENPLMCSSSHHGPSVSVL 303
           +K+ LA RA VAI+  L C + +HG    V+
Sbjct: 482 DKVYLATRATVAIKIVLQCDTRYHGQQNKVI 512


>SB_3365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 211 EKLVLAARAVVAIENPLMCSSSHHGPSVSVL 303
           +K+ LA RA VAI+  L C + +HG    V+
Sbjct: 267 DKVYLATRATVAIKIVLQCDTRYHGQQNKVI 297


>SB_49920| Best HMM Match : MANEC (HMM E-Value=0.73)
          Length = 139

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 156 CLQTTC*WYPCD-QLASYLGKTCSGCSC 236
           C+Q  C    CD  + SY G+TC G +C
Sbjct: 87  CVQRCCDVLHCDLAMMSYGGRTCYGVAC 114


>SB_33032| Best HMM Match : Prothymosin (HMM E-Value=0.78)
          Length = 508

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 96  NACCNHPSWGRKC*LPDGDLC 158
           N CC H SW  +C  PD  +C
Sbjct: 406 NPCCAHQSWRAEC--PDEGVC 424


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,766,582
Number of Sequences: 59808
Number of extensions: 312446
Number of successful extensions: 788
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)