Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20734
         (689 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    25   1.7  
AF291654-1|AAG00600.1| 1340|Anopheles gambiae thioester-containi...    23   6.9  
AF281078-2|AAF82132.1|  755|Anopheles gambiae vitellogenin 2 pro...    23   9.1  
AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 pro...    23   9.1  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = +3

Query: 321 FTEDRAVLHIALRNRQNKPILVNGKD-VSTDVNAVLEHMKEFSD 449
           + E+ A    ALR+   KPIL NG+D V   + + L+  +E++D
Sbjct: 486 YKEELARADQALRSMAGKPIL-NGRDSVRKVLESFLQRGREYAD 528



 Score = 23.8 bits (49), Expect = 5.2
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +1

Query: 28  IVTMEPKINLKQDAAYQKLQQYYNVNSTKINML 126
           +V     +NL + A +     YY V   KIN +
Sbjct: 115 VVPRSEVVNLLESAGFSNSNPYYIVKQGKINQM 147


>AF291654-1|AAG00600.1| 1340|Anopheles gambiae thioester-containing
            protein I protein.
          Length = 1340

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = +1

Query: 73   YQKLQQYYNVNSTKINMLQLFQQDRERFEKFSFCIPTPNDG--DILLDYSKNRINSD-VF 243
            Y+K  +Y+N+NS +I+ +Q F +  E  +K    +     G  +++  +  N +N +  F
Sbjct: 1139 YKKNTKYFNINSEQID-VQNFLEIPEDTKKLEINVGGIGFGLLEVIYQFDLNLVNFEHRF 1197

Query: 244  KL 249
            KL
Sbjct: 1198 KL 1199


>AF281078-2|AAF82132.1|  755|Anopheles gambiae vitellogenin 2
           protein.
          Length = 755

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = +3

Query: 438 EFSDQVVSGQWKGYTGKAITDVIKLVLEAQM 530
           E +   ++G W  YT ++++ V K+V+   +
Sbjct: 273 EVTQMYLTGNWYNYTIQSVSTVNKVVVSPSL 303


>AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1
           protein.
          Length = 2051

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = +3

Query: 438 EFSDQVVSGQWKGYTGKAITDVIKLVLEAQM 530
           E +   ++G W  YT ++++ V K+V+   +
Sbjct: 273 EVTQMYLTGNWYNYTIQSVSTVNKVVVSPSL 303


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 710,739
Number of Sequences: 2352
Number of extensions: 14118
Number of successful extensions: 34
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 69831885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)