Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20045
(722 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46666| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 7e-05
SB_43828| Best HMM Match : XPG_N (HMM E-Value=1.8) 33 0.18
SB_26135| Best HMM Match : RVT_1 (HMM E-Value=0.072) 33 0.18
SB_19117| Best HMM Match : XPG_N (HMM E-Value=1.8) 33 0.18
SB_43541| Best HMM Match : RVT_1 (HMM E-Value=0) 33 0.18
SB_40765| Best HMM Match : DX (HMM E-Value=1.4) 33 0.18
SB_20120| Best HMM Match : RVT_1 (HMM E-Value=0) 33 0.18
SB_38808| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_14726| Best HMM Match : Ribosomal_L30 (HMM E-Value=6.6) 32 0.41
SB_48112| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.41
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1) 29 2.9
SB_2897| Best HMM Match : RVT_1 (HMM E-Value=3e-33) 29 2.9
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076) 29 3.8
SB_51961| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_46666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 229
Score = 44.8 bits (101), Expect = 7e-05
Identities = 18/27 (66%), Positives = 23/27 (85%)
Frame = -1
Query: 254 GASANVVCAGVAEQHGYKFTFMNFFKI 174
GASANVVCAG++EQ+GY TF FF++
Sbjct: 31 GASANVVCAGLSEQYGYPLTFNKFFRM 57
>SB_43828| Best HMM Match : XPG_N (HMM E-Value=1.8)
Length = 174
Score = 33.5 bits (73), Expect = 0.18
Identities = 25/66 (37%), Positives = 31/66 (46%)
Frame = +1
Query: 508 HLDIFSTRLFSNFENGHVMASREYCGGFYHILPRTIRLWNELPFTVFSERYDMSFFKRGL 687
H D+ TR NF+ A++ FY PRTIR WN LP E + FKR L
Sbjct: 110 HQDL-RTRNSHNFKYYQEKATKNKY--FYSFFPRTIRHWNTLP-NELVELGSIEHFKRDL 165
Query: 688 WRYLGS 705
YL +
Sbjct: 166 EIYLNN 171
>SB_26135| Best HMM Match : RVT_1 (HMM E-Value=0.072)
Length = 375
Score = 33.5 bits (73), Expect = 0.18
Identities = 25/66 (37%), Positives = 31/66 (46%)
Frame = +1
Query: 508 HLDIFSTRLFSNFENGHVMASREYCGGFYHILPRTIRLWNELPFTVFSERYDMSFFKRGL 687
H D+ TR NF+ A++ FY PRTIR WN LP E + FKR L
Sbjct: 311 HQDL-RTRNSHNFKYYQEKATKNKY--FYSFFPRTIRHWNTLP-NELVELGSIEHFKRDL 366
Query: 688 WRYLGS 705
YL +
Sbjct: 367 EIYLNN 372
>SB_19117| Best HMM Match : XPG_N (HMM E-Value=1.8)
Length = 361
Score = 33.5 bits (73), Expect = 0.18
Identities = 25/66 (37%), Positives = 31/66 (46%)
Frame = +1
Query: 508 HLDIFSTRLFSNFENGHVMASREYCGGFYHILPRTIRLWNELPFTVFSERYDMSFFKRGL 687
H D+ TR NF+ A++ FY PRTIR WN LP E + FKR L
Sbjct: 297 HQDL-RTRNSHNFKYYQEKATKNKY--FYSFFPRTIRHWNTLP-NELVELGSIEHFKRDL 352
Query: 688 WRYLGS 705
YL +
Sbjct: 353 EIYLNN 358
>SB_43541| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 581
Score = 33.5 bits (73), Expect = 0.18
Identities = 25/66 (37%), Positives = 31/66 (46%)
Frame = +1
Query: 508 HLDIFSTRLFSNFENGHVMASREYCGGFYHILPRTIRLWNELPFTVFSERYDMSFFKRGL 687
H D+ TR NF+ A++ FY PRTIR WN LP E + FKR L
Sbjct: 517 HQDL-RTRNSHNFKYYQEKATKNKY--FYSFFPRTIRHWNTLP-NELVELGSIEHFKRDL 572
Query: 688 WRYLGS 705
YL +
Sbjct: 573 EIYLNN 578
>SB_40765| Best HMM Match : DX (HMM E-Value=1.4)
Length = 278
Score = 33.5 bits (73), Expect = 0.18
Identities = 25/66 (37%), Positives = 31/66 (46%)
Frame = +1
Query: 508 HLDIFSTRLFSNFENGHVMASREYCGGFYHILPRTIRLWNELPFTVFSERYDMSFFKRGL 687
H D+ TR NF+ A++ FY PRTIR WN LP E + FKR L
Sbjct: 214 HQDL-RTRNSHNFKYYQEKATKNKY--FYSFFPRTIRHWNTLP-NELVELDSIEHFKRDL 269
Query: 688 WRYLGS 705
YL +
Sbjct: 270 EIYLNN 275
>SB_20120| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 666
Score = 33.5 bits (73), Expect = 0.18
Identities = 25/66 (37%), Positives = 31/66 (46%)
Frame = +1
Query: 508 HLDIFSTRLFSNFENGHVMASREYCGGFYHILPRTIRLWNELPFTVFSERYDMSFFKRGL 687
H D+ TR NF+ A++ FY PRTIR WN LP E + FKR L
Sbjct: 602 HQDL-RTRNSHNFKYYQEKATKNKY--FYSFFPRTIRHWNTLP-NELVELGSIEHFKRDL 657
Query: 688 WRYLGS 705
YL +
Sbjct: 658 EIYLNN 663
>SB_38808| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 824
Score = 33.1 bits (72), Expect = 0.23
Identities = 18/39 (46%), Positives = 20/39 (51%)
Frame = +1
Query: 589 FYHILPRTIRLWNELPFTVFSERYDMSFFKRGLWRYLGS 705
FY PRTIR WN LP E + FKR L YL +
Sbjct: 784 FYSFFPRTIRHWNTLP-NELVELGSIEHFKRDLEIYLNN 821
>SB_14726| Best HMM Match : Ribosomal_L30 (HMM E-Value=6.6)
Length = 231
Score = 32.3 bits (70), Expect = 0.41
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +1
Query: 592 YHILPRTIRLWNELPFTVFSERYDMSFFKRGL 687
Y LPR +RLWN LP +V R F GL
Sbjct: 200 YSFLPRALRLWNNLPQSVIDMRGCPEAFHSGL 231
>SB_48112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 232
Score = 32.3 bits (70), Expect = 0.41
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +1
Query: 592 YHILPRTIRLWNELPFTVFSERYDMSFFKRGL 687
Y LPR +RLWN LP +V R F GL
Sbjct: 201 YSFLPRALRLWNNLPQSVIDMRGCPEAFHAGL 232
>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
Length = 2075
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +1
Query: 592 YHILPRTIRLWNELPFTVFSERYDMSFFKRGL 687
Y PRTIR WN LP V + D+ FK L
Sbjct: 1646 YSFFPRTIRTWNLLPAEVVNAA-DLPSFKSAL 1676
>SB_2897| Best HMM Match : RVT_1 (HMM E-Value=3e-33)
Length = 609
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = +1
Query: 508 HLDIFSTRLFSNFENGHVMASREYCGGFYHILPRTIRLWNELP 636
H D+ TR NF+ A++ FY PRTIR WN LP
Sbjct: 543 HQDL-RTRNSHNFKYYQEKATKNKY--FYSFFPRTIRHWNTLP 582
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = +1
Query: 592 YHILPRTIRLWNELPFTVFSERYDMSFFKRGL 687
Y PRTIR WN LP V + D+ FK L
Sbjct: 1092 YSFFPRTIRTWNLLPAEVVNAA-DLPSFKSAL 1122
>SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)
Length = 888
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +1
Query: 592 YHILPRTIRLWNELPFTVFSERY 660
Y +PR IRLWN L TV Y
Sbjct: 746 YSFVPRAIRLWNSLEVTVVLAAY 768
>SB_51961| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 193
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 592 YHILPRTIRLWNELPFTVFSE 654
Y PR IR+WN LP V ++
Sbjct: 141 YSFFPRAIRIWNLLPSNVINQ 161
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,968,384
Number of Sequences: 59808
Number of extensions: 528833
Number of successful extensions: 1176
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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