Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20029
(715 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY887136-1|AAW78361.1| 580|Tribolium castaneum vasa RNA helicas... 44 1e-06
AM292360-1|CAL23172.2| 427|Tribolium castaneum gustatory recept... 23 3.3
AM292331-1|CAL23143.2| 437|Tribolium castaneum gustatory recept... 23 3.3
AM292340-1|CAL23152.1| 355|Tribolium castaneum gustatory recept... 22 5.7
AM292364-1|CAL23176.2| 353|Tribolium castaneum gustatory recept... 21 7.5
AY362544-1|AAQ63456.1| 268|Tribolium castaneum chitin synthase ... 21 9.9
AY362543-1|AAQ63455.1| 677|Tribolium castaneum chitin synthase ... 21 9.9
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ... 21 9.9
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ... 21 9.9
AM292378-1|CAL23190.2| 387|Tribolium castaneum gustatory recept... 21 9.9
>AY887136-1|AAW78361.1| 580|Tribolium castaneum vasa RNA helicase
protein.
Length = 580
Score = 44.0 bits (99), Expect = 1e-06
Identities = 21/71 (29%), Positives = 37/71 (52%)
Frame = +2
Query: 41 KLETLCDLYDTLSIAQAVIFCNTRRKVDWLTESMHLRDFTVSAMHGDMDQREREVIMRQF 220
K L + + + +IF T+R D+L + ++ +++HGD Q ERE + F
Sbjct: 396 KRSKLVSILEKAPNERTLIFVETKRNADFLATFLSEQNIQSTSIHGDRYQSEREKALLDF 455
Query: 221 RTGSSRVLITT 253
+TG +VL+ T
Sbjct: 456 KTGHRKVLVAT 466
Score = 34.3 bits (75), Expect = 0.001
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = +1
Query: 262 ARGIDVQQVSCVINYDLPSNRENYXXXXXXXXXXXXXXXXXNFVTE-ADRRALKDIEDFY 438
ARG+D++ V VINYDLP + + Y +F E DR D+
Sbjct: 470 ARGLDIKDVQHVINYDLPKSIDEYVHRIGRTGRVGNKGKATSFFDEDQDRNLASDLAKIL 529
Query: 439 HTSIVEMP 462
+ E+P
Sbjct: 530 SQAKQEIP 537
>AM292360-1|CAL23172.2| 427|Tribolium castaneum gustatory receptor
candidate 39 protein.
Length = 427
Score = 22.6 bits (46), Expect = 3.3
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +3
Query: 147 CVTLLYLLCME 179
C+TLLY++C E
Sbjct: 322 CMTLLYIICNE 332
>AM292331-1|CAL23143.2| 437|Tribolium castaneum gustatory receptor
candidate 10 protein.
Length = 437
Score = 22.6 bits (46), Expect = 3.3
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +3
Query: 147 CVTLLYLLCME 179
C+TLLY++C E
Sbjct: 322 CMTLLYIICNE 332
>AM292340-1|CAL23152.1| 355|Tribolium castaneum gustatory receptor
candidate 19 protein.
Length = 355
Score = 21.8 bits (44), Expect = 5.7
Identities = 11/49 (22%), Positives = 20/49 (40%)
Frame = +1
Query: 493 YIFPILFCVLRSIAIFIRCVY*DKTPNYLTLPNFYWNLFHLDRYIHFRF 639
Y F F + +F+ C+Y P + L +Y+ + +H F
Sbjct: 114 YYFYYAFIIFTVHLLFLLCIYYFVVPLFFLLCIYYFYCAFIIFTVHLLF 162
>AM292364-1|CAL23176.2| 353|Tribolium castaneum gustatory receptor
candidate 43 protein.
Length = 353
Score = 21.4 bits (43), Expect = 7.5
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 124 IHLATGVAENYSLC 83
+HLA GV YS+C
Sbjct: 123 VHLAYGVVIIYSIC 136
>AY362544-1|AAQ63456.1| 268|Tribolium castaneum chitin synthase
protein.
Length = 268
Score = 21.0 bits (42), Expect = 9.9
Identities = 8/26 (30%), Positives = 13/26 (50%)
Frame = -2
Query: 471 HITGHFNDTSVVEVLNILQCSPVSFS 394
+ GH+ + V+ + CSP FS
Sbjct: 207 YAVGHWMQKATEHVIGCVLCSPGCFS 232
>AY362543-1|AAQ63455.1| 677|Tribolium castaneum chitin synthase
protein.
Length = 677
Score = 21.0 bits (42), Expect = 9.9
Identities = 8/26 (30%), Positives = 13/26 (50%)
Frame = -2
Query: 471 HITGHFNDTSVVEVLNILQCSPVSFS 394
+ GH+ + V+ + CSP FS
Sbjct: 521 YAVGHWMQKATEHVIGCVLCSPGCFS 546
>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
protein.
Length = 1464
Score = 21.0 bits (42), Expect = 9.9
Identities = 8/26 (30%), Positives = 13/26 (50%)
Frame = -2
Query: 471 HITGHFNDTSVVEVLNILQCSPVSFS 394
+ GH+ + V+ + CSP FS
Sbjct: 754 YAVGHWMQKATEHVIGCVLCSPGCFS 779
>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
CHS2 protein.
Length = 1464
Score = 21.0 bits (42), Expect = 9.9
Identities = 8/26 (30%), Positives = 13/26 (50%)
Frame = -2
Query: 471 HITGHFNDTSVVEVLNILQCSPVSFS 394
+ GH+ + V+ + CSP FS
Sbjct: 754 YAVGHWMQKATEHVIGCVLCSPGCFS 779
>AM292378-1|CAL23190.2| 387|Tribolium castaneum gustatory receptor
candidate 57 protein.
Length = 387
Score = 21.0 bits (42), Expect = 9.9
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 126 GSLNLCICVTLLYLLCMETWINVSVK 203
GS+N+ + +T M T+ NVS++
Sbjct: 53 GSMNMTVAITDKIANFMLTFFNVSLR 78
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,665
Number of Sequences: 336
Number of extensions: 3552
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -