Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20019
(587 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0608 + 16153992-16154960,16158959-16159168,16159252-161595... 30 1.2
11_04_0236 + 15215386-15216197,15216854-15218888,15219131-152200... 29 3.6
07_01_0542 + 4002542-4003119,4004347-4004404,4004518-4004835,400... 28 4.8
07_01_0404 + 3093851-3094051,3094622-3094948,3096685-3096798,309... 28 4.8
07_01_0400 + 3048607-3048807,3049378-3049704,3051441-3051554,305... 28 4.8
07_01_0396 + 3016900-3017175,3017926-3018039,3018138-3018350,301... 28 4.8
02_04_0084 - 19579104-19579230,19580323-19580417,19580578-195807... 28 4.8
01_03_0289 - 14725832-14726114,14726216-14726298,14726432-147265... 28 4.8
12_02_1269 + 27462644-27463612 28 6.3
07_01_1129 + 10466943-10467326,10467440-10467574,10467670-104679... 28 6.3
02_05_0139 - 26194892-26195230 28 6.3
02_01_0312 - 2082614-2082677,2082815-2082945,2083041-2083129,208... 28 6.3
06_02_0237 + 13341469-13342259,13342839-13343223,13343314-133434... 27 8.4
>05_03_0608 +
16153992-16154960,16158959-16159168,16159252-16159512,
16160153-16160197,16160324-16160410,16160679-16160774
Length = 555
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/43 (44%), Positives = 23/43 (53%)
Frame = -1
Query: 557 HALVASAFFPLALCFAAGRSGVMRTIARKALFPRPSNSWNSYV 429
+A VAS F PL AA S TIA A FP +S +S+V
Sbjct: 28 YASVASTFDPLLSSAAAAASPPSPTIAAAAAFPLSPSSSSSFV 70
>11_04_0236 + 15215386-15216197,15216854-15218888,15219131-15220017,
15222420-15226194
Length = 2502
Score = 28.7 bits (61), Expect = 3.6
Identities = 23/68 (33%), Positives = 31/68 (45%)
Frame = -2
Query: 388 APLWMESLFISCPLRQMILLRGASNIQMSRTNNASNRPLLSSVNFILGQQLEARDEAGKV 209
AP+ +E L SC +RG N++ T+ SN P +NF L + DE
Sbjct: 1839 APISIEHL--SCLEEISAKIRGGGNVEFPLTSAISNHPGNPRINFQLVDGVFYGDE--DE 1894
Query: 208 NHATYYMG 185
HAT MG
Sbjct: 1895 EHATPTMG 1902
>07_01_0542 +
4002542-4003119,4004347-4004404,4004518-4004835,
4005201-4005446,4005550-4005648,4005912-4006097,
4006204-4006401,4006521-4006596,4006721-4007637
Length = 891
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -1
Query: 533 FPLALCFAA--GRSGVMRTIARKALFPRPSNSWNSYVPQT*K*NQRETCIGTALD 375
FP+ LCFAA G S ++ + ++ L P S+ + N E C+ L+
Sbjct: 524 FPITLCFAASKGDSFLLHQLLKRGLDPNESDHYGRTALHIAASNGNEQCVRLLLE 578
>07_01_0404 +
3093851-3094051,3094622-3094948,3096685-3096798,
3096897-3097109,3097975-3098151,3098270-3100091,
3100107-3100927,3101070-3101390
Length = 1331
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -1
Query: 395 CIGTALDGVSLHQLPIETDDTIKRSVKHTDESHEQC 288
C+ +ALD + IE+D + S HT + E C
Sbjct: 580 CLKSALDYIDSSDTAIESDHDSQHSTAHTSTAPESC 615
>07_01_0400 +
3048607-3048807,3049378-3049704,3051441-3051554,
3051653-3051865,3052731-3052907,3053026-3054847,
3054863-3055683,3055826-3056146
Length = 1331
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -1
Query: 395 CIGTALDGVSLHQLPIETDDTIKRSVKHTDESHEQC 288
C+ +ALD + IE+D + S HT + E C
Sbjct: 580 CLKSALDYIDSSDTAIESDHDSQHSTAHTSTAPESC 615
>07_01_0396 +
3016900-3017175,3017926-3018039,3018138-3018350,
3019216-3019392,3019511-3021332,3021348-3022168,
3022311-3022631
Length = 1247
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -1
Query: 395 CIGTALDGVSLHQLPIETDDTIKRSVKHTDESHEQC 288
C+ +ALD + IE+D + S HT + E C
Sbjct: 496 CLKSALDYIDSSDTAIESDHDSQHSTAHTSTAPESC 531
>02_04_0084 -
19579104-19579230,19580323-19580417,19580578-19580719,
19581155-19581189,19581493-19581632,19581678-19581770,
19584007-19584244
Length = 289
Score = 28.3 bits (60), Expect = 4.8
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = -3
Query: 174 ENSFSDCSSGAGFSGQARVGCE*VGQSRALARMEATRSRVNSHVSR*ARTTRAS 13
E F G+G +GQA GC+ + A+A AT + V +HVS R T S
Sbjct: 78 EEEFHGTEKGSGRAGQAPAGCD---EDMAMA---ATYTAVQAHVSIRDRGTAGS 125
>01_03_0289 -
14725832-14726114,14726216-14726298,14726432-14726545,
14727830-14728199,14728726-14728856,14728970-14729078,
14729257-14729378,14729522-14729625,14729849-14729953,
14730034-14730192,14730336-14730391,14730576-14730627,
14730725-14731031
Length = 664
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -1
Query: 572 MTVCKHALVASAFFPLALCFAAGRSGVMRTIARKALFPRPSNSWN 438
+ V H L+ LA F + V+R IA LFP + +W+
Sbjct: 415 LLVGNHMLLGIELISLATEFLRRKGRVLRGIAHPLLFPNKTKTWS 459
>12_02_1269 + 27462644-27463612
Length = 322
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -1
Query: 554 ALVASAFFPLALCFAAGRSGVMRTIARKALFPRPSNSWNSY 432
ALV +A+ P L A GR+ +R R+ PS W++Y
Sbjct: 129 ALVENAYLPHVL--AEGRAVTVRNRQRRLFTNNPSADWSAY 167
>07_01_1129 +
10466943-10467326,10467440-10467574,10467670-10467972,
10468155-10468247
Length = 304
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = -2
Query: 430 FRKLESRINEKLALAPLWMESLFISCPLRQMILLRGASNIQMSRTNNASNRPLLSSVNFI 251
F KLE E + ++ + S+ +CP+ + +LL A + R N+AS + + +
Sbjct: 4 FPKLEHLGLEDVVISEGSLHSIIAACPVLECLLLVRAIGFRGLRINSASLTSIGVDILYF 63
Query: 250 LGQQLE 233
+Q+E
Sbjct: 64 PAEQIE 69
>02_05_0139 - 26194892-26195230
Length = 112
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -3
Query: 201 PRITWAKRCENSFSDCSSGAGFSGQARVGCE*VGQSRALARMEA 70
P + W+ RC +S S G G G+A G + + A+A M A
Sbjct: 2 PPVLWSPRCRDSVSVVGGGIGAGGEAGGGGQ---KQEAVAAMAA 42
>02_01_0312 -
2082614-2082677,2082815-2082945,2083041-2083129,
2083223-2083292,2083429-2083509,2083768-2083821,
2084864-2085067,2086272-2086366,2086976-2086997,
2087492-2087585,2087677-2087764,2087874-2087979,
2088103-2088189,2088261-2088309,2088418-2088521,
2088605-2088697,2088900-2088974,2089316-2089384,
2090182-2090250,2090339-2090374,2090471-2090565,
2090836-2090911,2091067-2091153,2091287-2091355,
2091654-2091731,2091836-2091925,2092436-2092642,
2092736-2092879
Length = 841
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +2
Query: 26 VRAHLDTCEFTRDRVASMRARARDCPTYSQPTLACPLNPAPELQSEKEFSQRF 184
++AH D F V + AR PT S T P NP+P +++ +F
Sbjct: 448 IKAHKDIAHFETAYVVKLHRIARLAPTQSVFTFDHP-NPSPNASNQRYTKLKF 499
>06_02_0237 +
13341469-13342259,13342839-13343223,13343314-13343427,
13343517-13344011
Length = 594
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -1
Query: 176 AKIPFQTAALAPGLVGKPE*AASRWDSHEL-WLAWK 72
A+ PF A APG+V +PE D H + W W+
Sbjct: 234 ARPPFNGAVPAPGVVVQPEGKGFHIDDHIVRWANWE 269
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,769,654
Number of Sequences: 37544
Number of extensions: 316674
Number of successful extensions: 945
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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