Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00023
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23377| Best HMM Match : WH1 (HMM E-Value=2.8)                       31   0.65 
SB_44452| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_50497| Best HMM Match : CH (HMM E-Value=0.0084)                     29   3.5  
SB_9532| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.5  
SB_40458| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   8.0  
SB_19872| Best HMM Match : PMG (HMM E-Value=2.5)                       28   8.0  

>SB_23377| Best HMM Match : WH1 (HMM E-Value=2.8)
          Length = 355

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 461 RQQTRIHKYYSRAPISRWETSSFIETDRSTACTP 562
           ++ T  H Y +R  IS    +SF+E+ R T C P
Sbjct: 89  QKSTAFHAYIARVVISIRSAASFLESSRETKCKP 122


>SB_44452| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 310 VPQAPVTALRQPFACDEGLTSKLTHRHSPLSFSPDLSESRFRS 182
           +P  P  +   P A    +++    RH+P SF+P  S SR RS
Sbjct: 90  IPSPPSLSTLSPLALSPPVSTPRQQRHTPPSFTPRSSISRRRS 132


>SB_50497| Best HMM Match : CH (HMM E-Value=0.0084)
          Length = 2086

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 23/74 (31%), Positives = 27/74 (36%), Gaps = 5/74 (6%)
 Frame = +3

Query: 378  PLYRFTLHKKCVPTYCSEPSLLCLHKSHDNRPASTSTIAGPRSVGGRPAPS*RQI----- 542
            P  R  L KK        P         + RPAS ST +GP S  G  A    Q      
Sbjct: 1697 PASRPALQKKAEENKPERPKSAAAKSQANTRPASKSTPSGPASNNGTVAAKPSQARPLAS 1756

Query: 543  ARQPVHPSRGRHEN 584
            A++P     GR  N
Sbjct: 1757 AKRPASAQAGRPAN 1770


>SB_9532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1339

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/45 (40%), Positives = 20/45 (44%)
 Frame = +3

Query: 78  KLYQLLVDVLTHGAQTRSVANTSPSKSSASQNLPLDRKRDSLRSG 212
           KL Q+L D       T  +AN SPS SS    L   R  D   SG
Sbjct: 422 KLTQVLKDSFVGNTMTCMIANISPSLSSCENTLNTLRYADRYYSG 466


>SB_40458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1383

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 19/39 (48%), Positives = 20/39 (51%)
 Frame = +1

Query: 493 PGPDQ*VGDQLLHRDRSLDSLYTRVEGVTKTTVNPLCIL 609
           P PD   GD LLH  R L S  T VEG T +    LC L
Sbjct: 217 PEPDVFRGD-LLHYPRWLKSFETIVEGQTDSPSERLCYL 254


>SB_49284| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1041

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +3

Query: 471 PASTSTIAG--PRSVGGRPAPS*RQIARQPV-HPSRGRHENDCKPVVYP 608
           P  TST+A   P  V   P P   Q A+QP  HPS    +++ K V  P
Sbjct: 333 PTRTSTVAHSIPAPVASVPQPP-PQPAQQPASHPSASSRQDEAKVVYVP 380


>SB_19872| Best HMM Match : PMG (HMM E-Value=2.5)
          Length = 147

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/65 (29%), Positives = 24/65 (36%)
 Frame = +3

Query: 405 KCVPTYCSEPSLLCLHKSHDNRPASTSTIAGPRSVGGRPAPS*RQIARQPVHPSRGRHEN 584
           K  P  CS  ++    K   NR  S  T  G R++ G   P   +   QP  P       
Sbjct: 65  KSTPRNCSFRAIAGSQKPVGNRSISQPTAPGFRAIAGSQKPVGNRSISQPTAPGFRAIAG 124

Query: 585 DCKPV 599
             KPV
Sbjct: 125 SQKPV 129


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,223,297
Number of Sequences: 59808
Number of extensions: 441523
Number of successful extensions: 1306
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1305
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)