Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00006
(654 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B, pu... 117 8e-27
At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B, pu... 116 1e-26
At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B, pu... 116 1e-26
At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A / s... 108 3e-24
At3g21215.1 68416.m02681 RNA-binding protein, putative contains ... 40 0.001
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 40 0.002
At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing ... 40 0.002
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 36 0.031
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 35 0.054
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 35 0.054
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 34 0.072
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 33 0.13
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 33 0.13
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 33 0.17
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 33 0.17
At5g42820.2 68418.m05216 U2 snRNP auxiliary factor small subunit... 33 0.22
At5g42820.1 68418.m05215 U2 snRNP auxiliary factor small subunit... 33 0.22
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 32 0.29
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 32 0.38
At1g27650.1 68414.m03379 U2 snRNP auxiliary factor small subunit... 31 0.51
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 31 0.67
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 31 0.67
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 31 0.67
At1g36160.1 68414.m04495 acetyl-CoA carboxylase 1 (ACC1) nearly ... 30 1.2
At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C) sim... 30 1.5
At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) simil... 30 1.5
At5g53180.1 68418.m06611 polypyrimidine tract-binding protein, p... 29 2.0
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 29 2.0
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 29 2.0
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 29 2.7
At4g08130.1 68417.m01337 hypothetical protein 29 2.7
At2g29220.1 68415.m03551 lectin protein kinase, putative similar... 29 2.7
At5g23590.1 68418.m02768 DNAJ heat shock N-terminal domain-conta... 29 3.6
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 28 4.7
At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing ... 28 4.7
At1g58190.1 68414.m06605 leucine-rich repeat family protein cont... 28 4.7
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 28 4.7
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 28 4.7
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 28 4.7
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 28 4.7
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 28 4.7
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 28 6.2
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 28 6.2
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 28 6.2
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 28 6.2
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 27 8.2
At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D) ribos... 27 8.2
At3g10420.2 68416.m01250 sporulation protein-related similar to ... 27 8.2
At1g50230.1 68414.m05632 protein kinase family protein contains ... 27 8.2
>At2g30260.1 68415.m03684 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative similar to
spliceosomal protein [Solanum tuberosum] GI:169589
Length = 232
Score = 117 bits (281), Expect = 8e-27
Identities = 52/84 (61%), Positives = 70/84 (83%)
Frame = +1
Query: 1 EELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMR 180
EELK+SLY +FSQFG+ILD+VA+KT K+RGQA+V F E+++A A+R MQ FPFYDKPMR
Sbjct: 24 EELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTAAGHAVRQMQNFPFYDKPMR 83
Query: 181 IQYSKIDSDIIAKSKGTFQERPKR 252
+QY+K SD +AK++GTF + K+
Sbjct: 84 LQYAKAKSDCLAKAEGTFVPKDKK 107
Score = 72.1 bits (169), Expect = 3e-13
Identities = 31/64 (48%), Positives = 42/64 (65%)
Frame = +3
Query: 321 HGIPGAGILNNVNAEQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAF 500
+G+P + PPN ILF+ NLP ET+ MML +LF Q+PGFKE+R++ + IAF
Sbjct: 139 NGVPAPSFQPSGQETMPPNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAF 198
Query: 501 VELE 512
VE E
Sbjct: 199 VEYE 202
Score = 37.5 bits (83), Expect = 0.008
Identities = 16/30 (53%), Positives = 24/30 (80%)
Frame = +2
Query: 512 NEMQSAAAKEALQGFKITPTHAMKITFAKK 601
+++Q++ A + LQGFKITP + M I+FAKK
Sbjct: 203 DDVQASIAMQPLQGFKITPQNPMVISFAKK 232
>At1g06960.2 68414.m00741 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 228
Score = 116 bits (280), Expect = 1e-26
Identities = 50/84 (59%), Positives = 71/84 (84%)
Frame = +1
Query: 1 EELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMR 180
EELK+SLY +FSQFG++LD+VA+KT K+RGQA+V+F E+++A+ A+R MQ FPFYDKPMR
Sbjct: 24 EELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTAASNAVRQMQNFPFYDKPMR 83
Query: 181 IQYSKIDSDIIAKSKGTFQERPKR 252
IQY+K SD + K++G+F + K+
Sbjct: 84 IQYAKSKSDYVTKAEGSFVPKEKK 107
Score = 67.7 bits (158), Expect = 6e-12
Identities = 29/48 (60%), Positives = 37/48 (77%)
Frame = +3
Query: 369 PPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVELE 512
PPN ILF+ NLP ET+ MML +LF Q+PGFKE+R++ + IAFVE E
Sbjct: 151 PPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYE 198
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/30 (56%), Positives = 25/30 (83%)
Frame = +2
Query: 512 NEMQSAAAKEALQGFKITPTHAMKITFAKK 601
+++QS+ A +ALQGFKITP + M ++FAKK
Sbjct: 199 DDVQSSMAMQALQGFKITPQNPMVVSFAKK 228
>At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B,
putative / spliceosomal protein, putative non-consensus
splice donor GC at exon 4; similar to spliceosomal
protein (U2B) GI:169588 from [Solanum tuberosum]
Length = 229
Score = 116 bits (280), Expect = 1e-26
Identities = 50/84 (59%), Positives = 71/84 (84%)
Frame = +1
Query: 1 EELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMR 180
EELK+SLY +FSQFG++LD+VA+KT K+RGQA+V+F E+++A+ A+R MQ FPFYDKPMR
Sbjct: 24 EELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTAASNAVRQMQNFPFYDKPMR 83
Query: 181 IQYSKIDSDIIAKSKGTFQERPKR 252
IQY+K SD + K++G+F + K+
Sbjct: 84 IQYAKSKSDYVTKAEGSFVPKEKK 107
Score = 67.7 bits (158), Expect = 6e-12
Identities = 29/48 (60%), Positives = 37/48 (77%)
Frame = +3
Query: 369 PPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVELE 512
PPN ILF+ NLP ET+ MML +LF Q+PGFKE+R++ + IAFVE E
Sbjct: 152 PPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYE 199
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/30 (56%), Positives = 25/30 (83%)
Frame = +2
Query: 512 NEMQSAAAKEALQGFKITPTHAMKITFAKK 601
+++QS+ A +ALQGFKITP + M ++FAKK
Sbjct: 200 DDVQSSMAMQALQGFKITPQNPMVVSFAKK 229
>At2g47580.1 68415.m05937 small nuclear ribonucleoprotein U1A /
spliceosomal protein U1A / U1snRNP-specific protein
identical to GB:Z49991 U1snRNP-specific protein
[Arabidopsis thaliana]
Length = 250
Score = 108 bits (260), Expect = 3e-24
Identities = 50/84 (59%), Positives = 64/84 (76%)
Frame = +1
Query: 1 EELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMR 180
+ELKKSL A+FSQFG+IL+I+A KT K +GQA+V+F SA+ A+ M FPFYDK MR
Sbjct: 32 DELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTESASTAIAKMNNFPFYDKEMR 91
Query: 181 IQYSKIDSDIIAKSKGTFQERPKR 252
IQY+K SD++AK+ GTF R KR
Sbjct: 92 IQYAKTKSDVVAKADGTFVPREKR 115
Score = 65.3 bits (152), Expect = 3e-11
Identities = 32/59 (54%), Positives = 39/59 (66%)
Frame = +3
Query: 330 PGAGILNNVNAEQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVE 506
PG N A PPN ILF+ NLP ET+ M+L MLF Q+ GFKEVR++ + IAFVE
Sbjct: 161 PGGMKPNMPEAPAPPNNILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVE 219
Score = 33.1 bits (72), Expect = 0.17
Identities = 18/35 (51%), Positives = 22/35 (62%)
Frame = +2
Query: 497 FC*IGNEMQSAAAKEALQGFKITPTHAMKITFAKK 601
F +EMQS A + LQGFKI + M IT+AKK
Sbjct: 217 FVEFADEMQSTVAMQGLQGFKI-QQNQMLITYAKK 250
Score = 31.9 bits (69), Expect = 0.38
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +1
Query: 88 GQAFVIFREISSATVALRSMQGFPFYDKPMRIQYSK 195
G AFV F + +TVA++ +QGF M I Y+K
Sbjct: 214 GIAFVEFADEMQSTVAMQGLQGFKIQQNQMLITYAK 249
>At3g21215.1 68416.m02681 RNA-binding protein, putative contains RNA
recognition motif, Pfam:PF00076; contains AT-AC splice
sites at intron 8
Length = 339
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +3
Query: 363 EQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLV-PNRHDIAFVELE 512
+ PP LF+ NL + +E L L + PGFK+++++ RH + F+E E
Sbjct: 228 DNPPCNTLFIGNLGENINEEELRSLLSAQPGFKQMKILRQERHTVCFIEFE 278
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/65 (35%), Positives = 37/65 (56%)
Frame = +1
Query: 7 LKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQ 186
L++ L F +FG+ L+ +A + R AFV F A A+ S+QGFP P+RI+
Sbjct: 35 LERELADRFLRFGE-LESLAFQP--GRSYAFVNFNHDEDAFAAIESLQGFPLSGNPLRIE 91
Query: 187 YSKID 201
++K +
Sbjct: 92 FAKAE 96
Score = 34.7 bits (76), Expect = 0.054
Identities = 25/85 (29%), Positives = 38/85 (44%)
Frame = +1
Query: 28 IFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQYSKIDSD 207
+FS FG+I + R AFV FR + +A A S+QG F + + I ++K +
Sbjct: 171 VFSSFGEITKVTVFPG---RSYAFVQFRNLMAACKAKESLQGKLFGNPRVHICFAKSEPS 227
Query: 208 IIAKSKGTFQERPKRPSYLKVLMMG 282
+G R P Y V +G
Sbjct: 228 SSGSGRGP-SGRSLSPPYRSVDRLG 251
>At1g09230.1 68414.m01030 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 442
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/48 (41%), Positives = 28/48 (58%)
Frame = +1
Query: 52 LDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQYSK 195
L + M+ +MRGQAF+ F + A AL + GF F KPM IQ+ +
Sbjct: 386 LGVRLMQEGRMRGQAFLTFPSVEVAHRALNLVNGFVFKGKPMIIQFGR 433
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +1
Query: 28 IFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQYSKIDSD 207
+FSQ+G + K+R AFV F+ + A+ A R + G F K +++Q + +D
Sbjct: 47 LFSQYGASA-VRPCSGGKLRNAAFVDFKNEAFASQAHRQLNGLRFLGKVLQVQRANKPND 105
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 35.5 bits (78), Expect = 0.031
Identities = 22/60 (36%), Positives = 32/60 (53%)
Frame = +1
Query: 16 SLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQYSK 195
+L IF +G++ + +T R Q FV F ++ A ALR M G KPM IQ+S+
Sbjct: 198 TLRHIFQVYGEVKQV--RETPCKREQRFVEFFDVRDAAKALRVMNGKVISGKPMVIQFSR 255
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 34.7 bits (76), Expect = 0.054
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAM--KTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQYS 192
L IF +GQI+ M + + +G FV F + A R + GF KP+ ++ +
Sbjct: 320 LREIFGCYGQIVSAKVMCHENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVA 379
Query: 193 KIDSDIIAKSKGTFQERPKR 252
+ D I + + FQ +P++
Sbjct: 380 ERKEDRIKRLQQYFQAQPRQ 399
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAMK--TLKMRGQAFVIFREISSATVALRSMQGFPFYDKPM 177
L+ +FSQ+G + +V M+ + RG FV F +A A+ S+ G K +
Sbjct: 218 LHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKL 272
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 34.7 bits (76), Expect = 0.054
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAMK---TLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQY 189
L +F FG ++ + + T + RG +V I+SA +A+ S+ G + MR++Y
Sbjct: 124 LLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRY 183
Query: 190 S 192
S
Sbjct: 184 S 184
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 34.3 bits (75), Expect = 0.072
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +1
Query: 13 KSLYAIFSQFGQILDI-VAMKTL-KMRGQAFVIFREISSATVALRSMQGFPFYDK 171
K+LY FS FG IL VAM + + +G FV F + +A A+ + G DK
Sbjct: 146 KALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDK 200
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = +1
Query: 31 FSQFGQILDIVAM---KTLKMRGQAFVIFREISSATVAL 138
F QFG+IL+ V + T K +G FV FRE SAT A+
Sbjct: 37 FEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV 75
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = +1
Query: 31 FSQFGQILDIVAM---KTLKMRGQAFVIFREISSATVAL 138
F QFG+IL+ V + T K +G FV FRE SAT A+
Sbjct: 37 FEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAV 75
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 33.1 bits (72), Expect = 0.17
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Frame = +1
Query: 1 EELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPF-YDK-P 174
E + L +F ++G++ D V MK+ G AFV F + A A+R + FPF Y+K
Sbjct: 12 ETRQSDLERLFDKYGRV-DRVDMKS----GYAFVYFEDERDAEDAIRKLDNFPFGYEKRR 66
Query: 175 MRIQYSK 195
+ ++++K
Sbjct: 67 LSVEWAK 73
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 33.1 bits (72), Expect = 0.17
Identities = 16/60 (26%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAMK---TLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQY 189
L A+FSQ+G+I+D+ ++ T K +G AF+ + + S +A+ ++ G + +++ +
Sbjct: 52 LLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIKVDH 111
>At5g42820.2 68418.m05216 U2 snRNP auxiliary factor small subunit,
putative strong similarity to U2 snRNP auxiliary factor,
small subunit [Oryza sativa] GI:3850816
Length = 283
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +1
Query: 1 EELKKSLYAIFSQFGQILDIVAMKTLK--MRGQAFVIFREISSATVALRSMQGFPFYDKP 174
E+ + ++ ++FG++ + L M G +V+F+E A AL+++QG + +P
Sbjct: 79 EDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEEDHAAAALQALQGRFYSGRP 138
Query: 175 MRIQYSKI 198
+ +S +
Sbjct: 139 IIADFSPV 146
>At5g42820.1 68418.m05215 U2 snRNP auxiliary factor small subunit,
putative strong similarity to U2 snRNP auxiliary factor,
small subunit [Oryza sativa] GI:3850816
Length = 283
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/68 (23%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +1
Query: 1 EELKKSLYAIFSQFGQILDIVAMKTLK--MRGQAFVIFREISSATVALRSMQGFPFYDKP 174
E+ + ++ ++FG++ + L M G +V+F+E A AL+++QG + +P
Sbjct: 79 EDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEEDHAAAALQALQGRFYSGRP 138
Query: 175 MRIQYSKI 198
+ +S +
Sbjct: 139 IIADFSPV 146
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 32.3 bits (70), Expect = 0.29
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +1
Query: 1 EELKKSLYAIFSQFGQILDIVAM---KTLKMRGQAFVIFREISSATVALRSMQGFPFYDK 171
E + L FS+FG ILD M T + RG F+ F + + ++R M G F D+
Sbjct: 17 EVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDR 76
Query: 172 PMRI 183
+ +
Sbjct: 77 VISV 80
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 31.9 bits (69), Expect = 0.38
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = +1
Query: 31 FSQFGQILDIVAMK---TLKMRGQAFVIFREISSATVAL 138
F QFG+IL+ V + T K +G FV FR+ SAT A+
Sbjct: 37 FDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAV 75
>At1g27650.1 68414.m03379 U2 snRNP auxiliary factor small subunit,
putative Strong similarity to gb|Y18349 U2 snRNP
auxiliary factor, small subunit from Oryza sativa. ESTs
gb|AA586295 and gb|AA597332 come from this gene
Length = 296
Score = 31.5 bits (68), Expect = 0.51
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +1
Query: 1 EELKKSLYAIFSQFGQI--LDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKP 174
E+ + L+ +FG+I L+I M G +V F+E A AL+++QG + +P
Sbjct: 79 EDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEEDQAAAALQALQGRFYSGRP 138
Query: 175 MRIQYSKI 198
+ +S +
Sbjct: 139 IIADFSPV 146
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 31.1 bits (67), Expect = 0.67
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +1
Query: 13 KSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQY 189
+ +Y IF ++G I I +G AFV++ +I A A+ + GF ++ + + Y
Sbjct: 33 EEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHLSGFNVANRYLIVLY 91
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 31.1 bits (67), Expect = 0.67
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Frame = +1
Query: 1 EELKKSLYAIFSQFGQILDI-VAMKTL-KMRGQAFVIFREISSATVALRSMQGFPFYDKP 174
E K+ L +FS FGQI + + K + + G AFV F A A +++ FY +
Sbjct: 679 EATKRELRQLFSPFGQIKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKALASTHFYGRH 738
Query: 175 MRIQYSKIDSDIIAKSK 225
+ ++++ D+ + A K
Sbjct: 739 LVLEWANDDNSMEAIRK 755
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 31.1 bits (67), Expect = 0.67
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAMK---TLKMRGQAFVIFREISSATVALRSM 147
++ +FS FG++ + +K T + RG AFV++ A A RSM
Sbjct: 73 IHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
>At1g36160.1 68414.m04495 acetyl-CoA carboxylase 1 (ACC1) nearly
identical to acetyl-CoA carboxylase 1 (ACC1) [Arabidopsis
thaliana] GI:11869927
Length = 2247
Score = 30.3 bits (65), Expect = 1.2
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 500 KSDIMSVWHETNLLKAWELIEQH 432
K + WH + LL +WE +E+H
Sbjct: 1086 KDSVRMQWHRSGLLASWEFLEEH 1108
>At1g33140.1 68414.m04093 60S ribosomal protein L9 (RPL90A/C)
similar to RIBOSOMAL PROTEIN L9 GB:P49209 from
[Arabidopsis thaliana]
Length = 194
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -3
Query: 493 ISCLFGTRRTSLKPGN*LNNIDNIISEVSSGRFVKNR 383
I FGTR+TS L+++DN+IS V+ G K R
Sbjct: 60 IDSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMR 96
>At1g33120.1 68414.m04090 60S ribosomal protein L9 (RPL90B) similar
to RIBOSOMAL PROTEIN L9 GB:P49209 from [Arabidopsis
thaliana]
Length = 194
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -3
Query: 493 ISCLFGTRRTSLKPGN*LNNIDNIISEVSSGRFVKNR 383
I FGTR+TS L+++DN+IS V+ G K R
Sbjct: 60 IDSWFGTRKTSASIRTALSHVDNLISGVTRGFRYKMR 96
>At5g53180.1 68418.m06611 polypyrimidine tract-binding protein,
putative / heterogeneous nuclear ribonucleoprotein,
putative similar to Polypyrimidine tract-binding protein
1 (PTB) (Heterogeneous nuclear ribonucleoprotein I)
(hnRNP I) from {Rattus norvegicus} SP|Q00438, {Homo
sapiens} SP|P26599; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 429
Score = 29.5 bits (63), Expect = 2.0
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +3
Query: 366 QPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRL-VPNRHDIAFVELEMKCNLQQLKK 542
QPP+++L L NLP E +E L L F + V + AF+E E Q+
Sbjct: 14 QPPSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAIQMIS 73
Query: 543 HYKDS 557
+Y S
Sbjct: 74 YYASS 78
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYD 168
L+ +F+ FG++ I AM QA + + ++ +A VA +++G YD
Sbjct: 262 LHMVFAAFGEVQKI-AMFDKNGGVQALIQYSDVQTAVVAKEALEGHCIYD 310
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 40 FGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQG 153
FG+ DI + RG AF+ +R + A A ++QG
Sbjct: 38 FGRYGDIDRITVYSSRGFAFIYYRHVEEAVAAKEALQG 75
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 29.5 bits (63), Expect = 2.0
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +1
Query: 10 KKSLYAIFSQFGQILD---IVAMKTLKMRGQAFVIFREISSATVALRSM 147
+K L IFS+FG ++D I T K R FV F E S T A+ M
Sbjct: 20 EKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDAIMIM 68
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 10 KKSLYAIFSQFGQILDIVA---MKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMR 180
++ LY +FS+ G+I I+ T G FV+F A++ + G D+P+R
Sbjct: 47 EEQLYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYISGTILDDRPIR 106
Query: 181 IQY 189
+ +
Sbjct: 107 VDF 109
>At4g08130.1 68417.m01337 hypothetical protein
Length = 226
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +3
Query: 345 LNNVNAEQPPNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVELE 512
L + A PP Q + +LP++ E +L P + E RL P+ H +A +E E
Sbjct: 78 LASYQAPPPPAQRSKIESLPEQILEGQKKILERYIPRWTERRLTPSWH-VALMESE 132
>At2g29220.1 68415.m03551 lectin protein kinase, putative similar to
receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733; contains protein kinase domain,
Pfam:PF00069; contains legume lectins alpha and beta
domains, Pfam:PF00138 and Pfam:PF00139
Length = 627
Score = 29.1 bits (62), Expect = 2.7
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = +3
Query: 306 SRLIGHGIPGAGILNNVNAEQPPNQILFLTNLPDETSEMMLSMLFNQFP 452
++ + HG GA +LN +++ P+ +L LTN TS + F+ FP
Sbjct: 27 TKFLNHGFLGANLLNFGSSKVYPSGLLELTN----TSMRQIGQAFHGFP 71
>At5g23590.1 68418.m02768 DNAJ heat shock N-terminal
domain-containing protein low similarity to SP|P39101
CAJ1 protein Saccharomyces cerevisiae; contains Pfam
profile PF00226 DnaJ domain
Length = 296
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +1
Query: 19 LYAIFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQG 153
L +FS+FG++ D+V +++ K + A ++ A A R++ G
Sbjct: 191 LREVFSEFGEVEDVV-IRSTKKKCSALIVMATKDGAVAATRTLCG 234
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +1
Query: 13 KSLYAIFSQFGQILDIVAM---KTLKMRGQAFVIFREISSATVA 135
+ L + F +FG+I+ + T + +G FV FRE+ SAT A
Sbjct: 23 EGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRA 66
>At4g18120.1 68417.m02694 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
gb:D86122
Length = 785
Score = 28.3 bits (60), Expect = 4.7
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +3
Query: 360 AEQPPNQ-ILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVE 506
+E+ NQ L + NL S L +F + KE+R PN+ FVE
Sbjct: 215 SEKDVNQGTLVVFNLAPSVSNRDLENIFGVYGEIKEIRETPNKRHHKFVE 264
>At1g58190.1 68414.m06605 leucine-rich repeat family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.2
[Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
Length = 1784
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 426 LSMLFNQFPGFKEVRLVPNRHDIAFVELEMKCNLQQLKK 542
L++ N+F GF + L+ N + +L + NL +LKK
Sbjct: 1130 LALSDNEFKGFFSLELIANLSKLKVFKLSSRSNLLRLKK 1168
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 58 IVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRI 183
++ T + +G FV F + S A+ M G P +PMRI
Sbjct: 188 VIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRI 229
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 58 IVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRI 183
++ T + +G FV F + S A+ M G P +PMRI
Sbjct: 188 VIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRI 229
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +1
Query: 28 IFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQ 186
+FS++G ++ I + G AFV F + A A+ G+ F +R++
Sbjct: 26 LFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVE 78
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +1
Query: 28 IFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQ 186
+FS++G ++ I + G AFV F + A A+ G+ F +R++
Sbjct: 26 LFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVE 78
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +1
Query: 28 IFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQ 186
+FS++G ++ I + G AFV F + A A+ G+ F +R++
Sbjct: 26 LFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVE 78
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 333 GAGILNNVNAEQPPNQILFLTNLPDETSEMMLSMLFNQF 449
G G+ + V E P LF+ N+P E + L+ F F
Sbjct: 333 GIGLSSVVQTEGPEGANLFIYNIPREFGDQELAAAFQSF 371
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +3
Query: 333 GAGILNNVNAEQPPNQILFLTNLPDETSEMMLSMLFNQF 449
G G+ + V E P LF+ N+P E + L+ F F
Sbjct: 334 GIGLSSVVQTEGPEGANLFIYNIPREFGDQELAAAFQSF 372
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +1
Query: 28 IFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQ 186
+FS++G ++ I + G AFV F + A A+ G+ F +R++
Sbjct: 26 LFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGYDFDGHHLRVE 78
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +1
Query: 28 IFSQFGQILDIVAMKTLKMRGQAFVIFREISSATVALRSMQGFPFYDKPMRIQ 186
+FS++G ++ I + G AFV F + A A+ G+ F +R++
Sbjct: 26 LFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGYDFDGHHLRVE 78
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 348 NNVNAEQPPNQI-LFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNR 485
+ V +PP + LF+ NLP + L+MLF Q + ++ NR
Sbjct: 102 DGVGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNR 148
>At4g10450.1 68417.m01717 60S ribosomal protein L9 (RPL90D)
ribosomal protein L9, cytosolic - garden pea,
PIR2:S19978
Length = 194
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 493 ISCLFGTRRTSLKPGN*LNNIDNIISEVSSGRFVKNR 383
I FG+R+TS L+++DN+I+ V+ G + R
Sbjct: 60 IDSWFGSRKTSASIRTALSHVDNLIAGVTQGFLYRMR 96
>At3g10420.2 68416.m01250 sporulation protein-related similar to
hypothetical proteins: GB:P51281 [Chloroplast Porphyra
purpurea], GB:BAA16982 [Synechocystis sp], GB:P49540
[Odontella sinensis], GB:AAB82669 [Chloroplast Cyanidium
caldarium]; similar to stage III sporulation protein AA
(GI:18145497) [Clostridium perfringens str. 13]; similar
to stage III sporulation protein AA (mutants block
sporulation after engulfment) (GI:22777578)
[Oceanobacillus iheyensis]
Length = 684
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 405 DETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVELEM 515
D E+ L++ + PG + V L+P R DI +LE+
Sbjct: 592 DALEEVRLAIEYIVIPGGEPVELLPRRSDIIVRQLEL 628
>At1g50230.1 68414.m05632 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 269
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 97 FVIFREISSATVALRSMQGFPFYDKPMRIQYSKIDSDIIAKSKG 228
F R +S+ TV LRS++G P Y P ++ D + S G
Sbjct: 146 FGFARAMSTNTVVLRSIKGTPLYMAPELVKEQPYDRTVDLWSLG 189
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,448,589
Number of Sequences: 28952
Number of extensions: 271491
Number of successful extensions: 724
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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