Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00004
         (783 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50| Best HMM Match : Peptidase_C14 (HMM E-Value=0)                  66   3e-11
SB_50362| Best HMM Match : Peptidase_C14 (HMM E-Value=0)               63   3e-10
SB_22562| Best HMM Match : No HMM Matches (HMM E-Value=.)              61   9e-10
SB_54787| Best HMM Match : Peptidase_C14 (HMM E-Value=0)               57   2e-08
SB_23468| Best HMM Match : Peptidase_C14 (HMM E-Value=8.7e-34)         52   4e-07
SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   3e-06
SB_21140| Best HMM Match : Peptidase_C14 (HMM E-Value=0)               49   5e-06
SB_11317| Best HMM Match : Trypsin (HMM E-Value=3e-08)                 31   1.1  
SB_55277| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_10122| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_7059| Best HMM Match : Peptidase_C14 (HMM E-Value=5.1e-33)          28   7.4  
SB_19622| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  

>SB_50| Best HMM Match : Peptidase_C14 (HMM E-Value=0)
          Length = 427

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 35/88 (39%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
 Frame = +3

Query: 48  ADKCPTLAGKPKLFFIQACQGDKLDGGITLSNTETDGXXXXXYRIPIHADFLIVFSTVPG 227
           A K   L GKPK+F  QACQG +   G     T+         ++P+ ADFL  +STVPG
Sbjct: 290 AFKGDNLVGKPKIFIFQACQGHEYMDG--KDATDAGPEDANRVQVPVEADFLYAYSTVPG 347

Query: 228 YYSWRNTTRA----LGLCNLFVKN*ETM 299
           YYSWRN+         +C +F K+   M
Sbjct: 348 YYSWRNSVNGSWFIQSICEVFNKHMHNM 375



 Score = 40.3 bits (90), Expect = 0.002
 Identities = 23/60 (38%), Positives = 35/60 (58%)
 Frame = +2

Query: 257 SWFMQSLCEELRNYGTQRDILTLLTFVCQRVALDFESNTPDITPMHQQKQVPCINSMLTR 436
           SWF+QS+CE    +    D+L ++T V   V+  ++S T D     ++KQVP I SML +
Sbjct: 358 SWFIQSICEVFNKHMHNMDVLRMMTRVNSLVS-TYQSRTGDYY-SDRKKQVPSIVSMLRK 415


>SB_50362| Best HMM Match : Peptidase_C14 (HMM E-Value=0)
          Length = 501

 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 32/70 (45%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
 Frame = +3

Query: 42  FTADKCPTLAGKPKLFFIQACQGDKLDGGITLSNT-ETDGXXXXXYRI-PIHADFLIVFS 215
           F  + CPTLA KPKLFFIQAC+G   D GI    T + D          P  + FL+ ++
Sbjct: 369 FKGNACPTLAHKPKLFFIQACRGQDFDRGIQADATRDMDASDAVRQNAEPNESHFLLGYA 428

Query: 216 TVPGYYSWRN 245
           T PGY SWR+
Sbjct: 429 TPPGYVSWRS 438



 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 257 SWFMQSLCEELRNYGTQRDILTLLTFVCQRVALDF 361
           SW++  LCE L  Y  + D++T++  V  +V+  F
Sbjct: 443 SWYISFLCEVLSTYCERYDLVTMMVKVNDKVSEAF 477


>SB_22562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 61.3 bits (142), Expect = 9e-10
 Identities = 33/78 (42%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
 Frame = +3

Query: 24  DNLWYYFTADKCPTLAGKPKLFFIQACQGDKLDGGITLSNTETD--GXXXXXYRIPIHAD 197
           D +   F    CP LA KPKLFFIQAC+GD +D G  +S    +          +P  AD
Sbjct: 20  DEITGKFQGTNCPQLATKPKLFFIQACRGDDVDKGYVVSRGHRNHHHEEELPVTLPSEAD 79

Query: 198 FLIVFSTVPGYYSWRNTT 251
           FLI +ST  G  S+R  T
Sbjct: 80  FLIAYSTTKGKVSFRRYT 97


>SB_54787| Best HMM Match : Peptidase_C14 (HMM E-Value=0)
          Length = 277

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 26/74 (35%), Positives = 45/74 (60%)
 Frame = +3

Query: 24  DNLWYYFTADKCPTLAGKPKLFFIQACQGDKLDGGITLSNTETDGXXXXXYRIPIHADFL 203
           ++L   F    CP+L GKPK+FF+QAC+G K +  +    ++++        +P  +DFL
Sbjct: 143 ESLTNKFRGSTCPSLQGKPKVFFLQACRGAKKE--LVAVESDSEPVPIRHSGLPSDSDFL 200

Query: 204 IVFSTVPGYYSWRN 245
           I +++ PGY S+R+
Sbjct: 201 ICYASSPGYESYRH 214



 Score = 28.7 bits (61), Expect = 5.6
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = +2

Query: 257 SWFMQSLCEELRNYGTQRDILTLLTFVCQRVALDFESNTPDITPMHQQKQVPCINSMLTR 436
           SWF++S+ +  R++G    ++ L+  V  RVA    SN          KQ+P    MLTR
Sbjct: 219 SWFIRSIVDVFRHFGQTEHLMDLMLRVNHRVA-SLNSNL-------GHKQMPSEVCMLTR 270


>SB_23468| Best HMM Match : Peptidase_C14 (HMM E-Value=8.7e-34)
          Length = 212

 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 13/82 (15%)
 Frame = +3

Query: 42  FTADKCPTLAGKPKLFFIQACQGDKLDGGITLSN----TETDGXXXXXYRIPIH------ 191
           F+   C +LAGKPKLFFIQAC+G+K D G  + +     E        + +  H      
Sbjct: 66  FSNALCRSLAGKPKLFFIQACRGEKKDFGTIVQDGPKPPEEHQETPYKFDLSPHNKGAST 125

Query: 192 ---ADFLIVFSTVPGYYSWRNT 248
              ADFL+ +STV G+ S+RNT
Sbjct: 126 AEMADFLLAYSTVGGHASFRNT 147


>SB_17986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 724

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 12/88 (13%)
 Frame = +3

Query: 24  DNLWYYFTADKCPTLAGKPKLFFIQACQGDKLDGGITLSNT------------ETDGXXX 167
           ++L   F +  C TLAGKPK+FF+QAC+G   +    +S++            E D    
Sbjct: 578 EDLMTEFKSLHCATLAGKPKMFFVQACRGSDKENLENISHSTPSFDSIPGEVLERDSSLP 637

Query: 168 XXYRIPIHADFLIVFSTVPGYYSWRNTT 251
                P+ AD L+ ++T PGY ++R+ T
Sbjct: 638 RSLN-PVEADVLLAYATPPGYVAYRSPT 664


>SB_21140| Best HMM Match : Peptidase_C14 (HMM E-Value=0)
          Length = 377

 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 31/90 (34%), Positives = 39/90 (43%), Gaps = 22/90 (24%)
 Frame = +3

Query: 42  FTADKCPTLAGKPKLFFIQACQGDKLDGGITLSNT----------------------ETD 155
           F   +   L GKPKLFF+QAC+G   D G  +                         E D
Sbjct: 258 FNGYQAKDLIGKPKLFFLQACRGGDFDHGARMEQIDSPTDVEEKTTTEQIIDEIFPEEID 317

Query: 156 GXXXXXYRIPIHADFLIVFSTVPGYYSWRN 245
                   +P  ADFLI ++TVPGY SWR+
Sbjct: 318 SGFLEKSSLPSEADFLIAYATVPGYVSWRH 347


>SB_11317| Best HMM Match : Trypsin (HMM E-Value=3e-08)
          Length = 153

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 160 EPSVSVLDNVIPPSNLSPWQA*IKNSFGFP 71
           +PS  ++     P N  PWQA ++++ GFP
Sbjct: 19  KPSTRIVGGTAAPKNAWPWQAQLRSASGFP 48


>SB_55277| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 359

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +1

Query: 139 PTLKQMVLRLHPTESQFMLTF*LCSQRYQVI 231
           P L Q VL+L P+E     T  LC   Y VI
Sbjct: 256 PELAQQVLKLPPSEGMSRFTLGLCMMCYAVI 286


>SB_10122| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 249

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +1

Query: 196 TF*LCSQRYQVITLGETQLVLLVYAISL*RIEKLWYSKRYSYTLDICL 339
           TF  CS R QV+ L ET  VL     ++ R+E        SY  + CL
Sbjct: 60  TFYECSSRLQVLLLQETSKVLDGVTENIERLESQLDEGHMSYYQNFCL 107


>SB_7059| Best HMM Match : Peptidase_C14 (HMM E-Value=5.1e-33)
          Length = 296

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 183 PIHADFLIVFSTVPGYYSWRNT 248
           P+  D +  +STV GY S+RNT
Sbjct: 208 PVLQDVIFAYSTVEGYASFRNT 229



 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +2

Query: 257 SWFMQSLCEELRNYGTQRDILTLLTFVCQRVA 352
           SWF+ ++ +    +  + DI++LLT+V   V+
Sbjct: 232 SWFINAIVDVFSKHAWEEDIVSLLTYVSYEVS 263


>SB_19622| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 862

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 183 PIHADFLIVFSTVPGYYSWRNT 248
           P+  D +  +STV GY S+RNT
Sbjct: 774 PVLQDVIFAYSTVEGYASFRNT 795



 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +2

Query: 257 SWFMQSLCEELRNYGTQRDILTLLTFVCQRVA 352
           SWF+ ++ +    +  + DI++LLT+V   V+
Sbjct: 798 SWFINAIVDVFSKHAWEEDIVSLLTYVSYEVS 829


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,024,348
Number of Sequences: 59808
Number of extensions: 431094
Number of successful extensions: 826
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)