Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1367
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    31   0.16 
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    31   0.21 
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    29   0.48 
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    29   0.64 
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    29   0.85 
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    27   2.0  
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra...    27   2.0  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   2.6  
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    26   4.5  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    25   7.9  

>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +3

Query: 270 PKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVPSS 413
           P  P ++P    V P +PV P T++     +  P ++P     +VP S
Sbjct: 221 PPQPAVAPSVSAVVPNLPVHPATAINAQSQSGNPLSNPLFQPSNVPQS 268


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 207 VQEILKDMASQGDYASKHXRWPKPPELSPIYLPVSPVMP 323
           +Q IL+ +A +GD        PKPP +  I  P+ P  P
Sbjct: 358 LQSILRSLAIEGDDDEVAKVLPKPPSVPTIQAPIPPEAP 396


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 24/85 (28%), Positives = 37/85 (43%)
 Frame = +3

Query: 159 AWDYVDDTDKSXAILNVQEILKDMASQGDYASKHXRWPKPPELSPIYLPVSPVMPVQPLT 338
           A++   DT  +   LN  E +  M +QG   S           SP +   +PV P QPL 
Sbjct: 242 AYEVTGDTRAASPTLNPFEQMMAMTNQGMSVSPGVETTS----SPFF--TAPVEPNQPLQ 295

Query: 339 SLTLTQTASGPETSPASDNLSVPSS 413
            L  + T   P +  +   L++PS+
Sbjct: 296 PLRPSMTGPVPSSMGSEATLNMPST 320


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 90  NQYSDNEIPRDIDDGKASSVISRAWDYVDDTDKSXAILNVQEI-LKDMASQGDYASKH 260
           NQ S      D+D+  ASS++S A     D+D      N+       +A  GD +S+H
Sbjct: 3   NQSSSGSNTSDLDEESASSLVSSAASPFIDSDLETPRPNISRASTGQLAEDGDTSSQH 60


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +3

Query: 210 QEILKDMASQGDYASKHXRWPKPPELSPIYLPVSPVMPVQP-LTSLTLTQTASGPETSPA 386
           ++I K++A+          WP PP +    L V+     QP ++ +  T   S   T P+
Sbjct: 405 RDIAKNVATWLKNGENFSSWPLPPLMDLASLSVAEPRDSQPSVSQVNDTFVKSSDSTFPS 464

Query: 387 SDNLSVPS 410
           S ++  PS
Sbjct: 465 SQSMQSPS 472


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = +3

Query: 249 ASKHXRWPKPPELSPIYLPVSPVMPVQPLT---SLTLTQTASGPETSPAS 389
           A KH   P PP   P+   +SP MP  PLT   S T     S PE+ P S
Sbjct: 739 AVKHH--PPPP---PVRSSISPSMPPAPLTHANSSTPMNYVSQPESPPQS 783


>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 369

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +3

Query: 96  YSDNEIPRDIDDGKASSVISRAWDYVDDTDKSXAIL-NVQEILKDMASQGDYASKHXRWP 272
           Y+D+E P D +  K S+++ +A+ +V   +   + L N   I  +  + G    +  R+P
Sbjct: 158 YTDSEAPNDSEKQKNSTLLPKAYLFVPGLENIRSYLPNRHWIESNAITTGKAVEELPRFP 217

Query: 273 KPPE 284
             P+
Sbjct: 218 DDPK 221


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = -2

Query: 529  EVIDSSTPAQPRAWSDRVSELTRVDDELIDKIQVLSHVSEEGTERLSEAGEVSGPDAVCV 350
            E++  S+P  P AW  R  +  +      DK  V   + E+ +++LS   +V  P +V  
Sbjct: 1009 EILSRSSPKSPVAWFKRKFKNRK------DKAAVKRMLEEDSSKQLSSGRDVVAPTSVNH 1062

Query: 349  RVNDVSGCT 323
             V+ V   T
Sbjct: 1063 DVSHVGEST 1071


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +3

Query: 243 DYASKHXRWPKPPELSPIYLPVSPVMPVQPLTSLTLTQTASGPETSPASDNLSVP 407
           DY+    ++P   + SP+   +  +   +P  S +  QTA    +S  SD  S P
Sbjct: 152 DYSKVSGKYPSVIDNSPVKSKLGALPSARPRLSYSAAQTAPISLSSEGSDYFSRP 206


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -3

Query: 330 AAQASPGIPADRWAIIPAVWATXDAYLHNRPGWPCPSR 217
           A    P +  D++A  P + +   A ++    WP PSR
Sbjct: 110 AKYIDPAVYYDKYARSPYIMSPFVACVNTLSAWPAPSR 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,714,886
Number of Sequences: 5004
Number of extensions: 51658
Number of successful extensions: 182
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)