Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1354
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    28   0.73 
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   6.8  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    25   9.0  

>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -2

Query: 274 CGTVREVV*SPPLPAAWVQRMALSCSRLHGNTSCLFVLSL 155
           CGT   V     +   W+  +AL+ SR +GNT  L  L L
Sbjct: 173 CGTQVFVGSGRSIDCQWMDSVALNLSRYYGNTEALSSLPL 212


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = -1

Query: 467  LPALMSFSTTRTHPKA----IKQKFRMWKQIKLNHSE 369
            LP L+SFS+  T P+     I Q F  W Q K N SE
Sbjct: 1960 LPKLVSFSSASTEPRKLALDIVQTFINW-QRKQNESE 1995


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 216 GWRSPALAFTETLPV 172
           GW+SP+LA   TLP+
Sbjct: 30  GWKSPSLAEPFTLPI 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,212,990
Number of Sequences: 5004
Number of extensions: 44218
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)