Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesS1345
(698 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.) 159 3e-39
SB_54522| Best HMM Match : No HMM Matches (HMM E-Value=.) 128 6e-30
SB_3671| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.010
SB_40082| Best HMM Match : tRNA-synt_2 (HMM E-Value=8.1e-37) 33 0.29
SB_8123| Best HMM Match : Tfb2 (HMM E-Value=0.00019) 31 0.90
SB_23860| Best HMM Match : Defensin_3 (HMM E-Value=3.3) 30 1.6
SB_43852| Best HMM Match : DnaJ (HMM E-Value=1.7e-37) 29 3.6
SB_31376| Best HMM Match : CLN3 (HMM E-Value=5.5e-06) 29 4.8
SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30) 28 6.3
>SB_17956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1449
Score = 159 bits (385), Expect = 3e-39
Identities = 68/76 (89%), Positives = 74/76 (97%)
Frame = +3
Query: 33 EVETPLMNMVPGGATAKPFITHHNELNMDLYMRIAPELYHKMLVVGGLDRVYEIGRQFRN 212
+VETPLMNM+PGGATAKPFITHHN+LNMDL+MR+APELYHKMLVVGG+DRVYEIGRQFRN
Sbjct: 758 KVETPLMNMIPGGATAKPFITHHNDLNMDLFMRVAPELYHKMLVVGGIDRVYEIGRQFRN 817
Query: 213 EGIDLTHNPEFTTCNF 260
E IDLTHNPEFTTC F
Sbjct: 818 ESIDLTHNPEFTTCEF 833
Score = 119 bits (287), Expect = 2e-27
Identities = 62/136 (45%), Positives = 84/136 (61%), Gaps = 7/136 (5%)
Frame = +2
Query: 257 FYMAYADYNDLMTITESILSGMVQSIHGSYKVKYHPEGPE----GKEIEIDFTPPFARVP 424
FYMAYADYNDLM ITE+++SGMV++I G YKV YHPE + GK +DFTPPF R+
Sbjct: 833 FYMAYADYNDLMEITETMISGMVKNITGGYKVTYHPEAVDADNLGKSWTVDFTPPFKRLR 892
Query: 425 MMATLERVLNVKLPAPDKLDTPEANDFLTTYATLIRMSARHRGPPR--GSWINWFL-YFW 595
M+ LE+VL V+LP+P +TPEAN L + PPR ++ + F
Sbjct: 893 MIPELEKVLGVRLPSPQDFNTPEANKLLDQLCVKHEVDC---APPRTTARLLDKLVGEFL 949
Query: 596 REECINPHLLXDHPQI 643
+C++P + DHP+I
Sbjct: 950 ESQCVSPTFIIDHPEI 965
>SB_54522| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 61
Score = 128 bits (308), Expect = 6e-30
Identities = 55/60 (91%), Positives = 60/60 (100%)
Frame = +3
Query: 36 VETPLMNMVPGGATAKPFITHHNELNMDLYMRIAPELYHKMLVVGGLDRVYEIGRQFRNE 215
VETPLMNM+PGGATAKPFITHHN+LNMDL+MR+APELYHKMLVVGG+DRVYEIGRQFRNE
Sbjct: 1 VETPLMNMIPGGATAKPFITHHNDLNMDLFMRVAPELYHKMLVVGGIDRVYEIGRQFRNE 60
>SB_3671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +2
Query: 260 YMAYADYNDLMTITESILSGMVQSIHGS-YKVKYHPEG 370
YMAYADY+DL+ +TES+ + Q + G+ Y+ + G
Sbjct: 100 YMAYADYHDLIELTESLFRTLAQEVLGTGYRARIRNHG 137
>SB_40082| Best HMM Match : tRNA-synt_2 (HMM E-Value=8.1e-37)
Length = 479
Score = 32.7 bits (71), Expect = 0.29
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 123 YMRIAPELYHKMLVVGGLDRVYEIGRQFRNE 215
++ +P+LY +M + G D+VY IG FR E
Sbjct: 252 FLAQSPQLYKQMALTGDFDKVYTIGSVFRAE 282
>SB_8123| Best HMM Match : Tfb2 (HMM E-Value=0.00019)
Length = 448
Score = 31.1 bits (67), Expect = 0.90
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +2
Query: 341 SYKVKYHPEGPEGKEIEIDFTPPFARVPMMATLERVLNVKLPAPDKLDTPEAND 502
S +V +HP P+ +E+ F PP + + + ++ +++ DK D + ND
Sbjct: 365 SVEVTFHPSNPKCDSVEVHFHPPNPKCDSVEVMTKM--IRVIDDDKNDDDDYND 416
>SB_23860| Best HMM Match : Defensin_3 (HMM E-Value=3.3)
Length = 242
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = -2
Query: 589 IQKPIYPRASRWSSVASTHSDECCIGCKEIISFRCIKFIGCWEFHVKNTFQCCHHRYSSK 410
+ P +PRA++ S S H ++ GCK+ IG +++ + CC S+
Sbjct: 168 VNHPHHPRATKTDSRGSGHPEKGSRGCKQ--------SIGLTMMQIRDNYHCCRKERLSR 219
Query: 409 GWCEI-DFYFLTLWS 368
C+ D FL WS
Sbjct: 220 --CKSRDDGFLRQWS 232
>SB_43852| Best HMM Match : DnaJ (HMM E-Value=1.7e-37)
Length = 399
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +2
Query: 275 DYNDLMTITESILSGMVQSIHGSYKVKYHPEGPEGKEIEIDF 400
DY D++ +T S ++ + +KYHP+ + E+ F
Sbjct: 4 DYYDILGLTRSATDADIKKEYRKLSLKYHPDKNQEPSAEVKF 45
>SB_31376| Best HMM Match : CLN3 (HMM E-Value=5.5e-06)
Length = 416
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +3
Query: 21 MGFLEVETPLMNMVPG--GATAKPFITHH 101
MG +EV TP N+V G GA +P + H
Sbjct: 357 MGLVEVSTPAANLVAGIVGAVIEPLLKEH 385
>SB_38727| Best HMM Match : 7tm_1 (HMM E-Value=9.2e-30)
Length = 420
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -2
Query: 421 YSSKGWCEIDFYFLTLWSFWMIFDLVGSMNALYH 320
Y S+GW F L + W++FD++G + ++ H
Sbjct: 75 YHSEGW------FKLLHNVWLVFDILGGVGSILH 102
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,256,360
Number of Sequences: 59808
Number of extensions: 533425
Number of successful extensions: 1028
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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