Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1259
         (528 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)              140   9e-34
SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)              121   4e-28
SB_33690| Best HMM Match : Fer4 (HMM E-Value=2.1)                      32   0.34 
SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)                   28   4.1  
SB_3221| Best HMM Match : rve (HMM E-Value=3)                          28   4.1  
SB_32242| Best HMM Match : Pam16 (HMM E-Value=7.4e-20)                 27   7.2  
SB_33607| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)                 27   7.2  
SB_27475| Best HMM Match : PCMT (HMM E-Value=5.5)                      27   9.6  

>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 413

 Score =  140 bits (338), Expect = 9e-34
 Identities = 64/76 (84%), Positives = 70/76 (92%)
 Frame = +1

Query: 16  KPRGIRTARKHVNHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQP 195
           KPRG+RTARK  +HRR+Q+W DK +KKAH+GT  KANPFGGASHAKGIVLEKVGVEAKQP
Sbjct: 2   KPRGLRTARKLRSHRRDQKWHDKAYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQP 61

Query: 196 NSAIRKCVRVQLIKNG 243
           NSAIRKCVRVQLIKNG
Sbjct: 62  NSAIRKCVRVQLIKNG 77



 Score = 74.1 bits (174), Expect = 6e-14
 Identities = 30/40 (75%), Positives = 36/40 (90%)
 Frame = +3

Query: 243 KESDXFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGV 362
           K+   FVP DGCLN+IEENDEVL++GFGR+GHAVGDIPG+
Sbjct: 78  KKITAFVPNDGCLNYIEENDEVLISGFGRRGHAVGDIPGI 117


>SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 143

 Score =  121 bits (291), Expect = 4e-28
 Identities = 55/65 (84%), Positives = 61/65 (93%)
 Frame = +3

Query: 243 KESDXFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKK 422
           K+   FVP DGCLN+IEENDEVL++GFGR+GHAVGDIPGVRFKVVKVANVSLLAL+KEKK
Sbjct: 79  KKITAFVPNDGCLNYIEENDEVLISGFGRRGHAVGDIPGVRFKVVKVANVSLLALFKEKK 138

Query: 423 ERPRS 437
           ERPRS
Sbjct: 139 ERPRS 143



 Score = 51.2 bits (117), Expect = 5e-07
 Identities = 23/26 (88%), Positives = 25/26 (96%)
 Frame = +1

Query: 166 EKVGVEAKQPNSAIRKCVRVQLIKNG 243
           ++ GVEAKQPNSAIRKCVRVQLIKNG
Sbjct: 53  QEPGVEAKQPNSAIRKCVRVQLIKNG 78


>SB_33690| Best HMM Match : Fer4 (HMM E-Value=2.1)
          Length = 488

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
 Frame = -2

Query: 233 MSCTRTHLRMAELGCLASTPTFSR-----TMPFA*DAPPKGLAFHFVPMWAFLNSLSAHR 69
           M C   +    E+ C    PT  R     T     DA P GL  H   M   L+  +  R
Sbjct: 58  MPCQLDYPNYREMPCQLDCPTTERCPANWTTQLQRDALPTGLPKHR-EMPCQLDYPTTER 116

Query: 68  CSRRWFTCLRAVRIPRGLP 12
           C   W T L+   +P GLP
Sbjct: 117 CPANWTTQLQRDALPTGLP 135



 Score = 29.1 bits (62), Expect = 2.4
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
 Frame = -2

Query: 200 ELGCLASTPTFSR-----TMPFA*DAPPKGLAFHFVPMWAFLNSLSAHRCSRRWFTCLRA 36
           E+ C    PT  R     T     DA P GL  ++  M   L+  +  RC   W T L+ 
Sbjct: 139 EMPCQLDYPTTERCPANWTTQLQRDALPTGLP-NYREMSCQLDYPTTERCPANWTTQLQR 197

Query: 35  VRIPRGLP 12
             +P GLP
Sbjct: 198 DTLPTGLP 205



 Score = 28.7 bits (61), Expect = 3.1
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
 Frame = -2

Query: 200 ELGCLASTPTFSR-----TMPFA*DAPPKGLAFHFVPMWAFLNSLSAHRCSRRWFTCLRA 36
           E+ C    PT  R     T     DA P GL  ++  M   L+  +  RC   W T L+ 
Sbjct: 104 EMPCQLDYPTTERCPANWTTQLQRDALPTGLP-NYREMPCQLDYPTTERCPANWTTQLQR 162

Query: 35  VRIPRGLP 12
             +P GLP
Sbjct: 163 DALPTGLP 170


>SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 96  SPHGYEMEG*PFRWCISRKGHRPRESWCRS*AA 194
           S HG  MEG P  W +S  G  P+ S C S +A
Sbjct: 85  SQHGTRMEGVPVCWYVSVWGLSPQVSQCDSVSA 117


>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
          Length = 943

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = -2

Query: 164  RTMPFA*D-APPKGLAFHFVPMW-AFLN-SLSAHR 69
            R +PF+   APPKG  F  VP+W +F N S+  HR
Sbjct: 902  RKVPFSSVLAPPKGYRFLIVPLWRSFSNRSVFGHR 936


>SB_3221| Best HMM Match : rve (HMM E-Value=3)
          Length = 324

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 23/71 (32%), Positives = 34/71 (47%)
 Frame = -3

Query: 460 SLITMYTYDLGRSFFSL*RARRDTLATFTTLKRTPGMSPTA*PLRPNPATSTSSFSSMWF 281
           S  T  TYDL  SF+S+  +  + LAT   +K++P +   +  L+P  A   S  S    
Sbjct: 9   SFDTFPTYDLA-SFYSVLCSGDEQLATIKLMKKSPSLFQKSHTLKPR-ANCASIASETLA 66

Query: 280 RQPSRGTNXSL 248
           +Q  R  N  L
Sbjct: 67  QQCWRSLNTVL 77


>SB_32242| Best HMM Match : Pam16 (HMM E-Value=7.4e-20)
          Length = 255

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 56  TVVNSDGRTKNSRKPTWVRNGRLTLSVVHLT 148
           T V    R  N++KP  +R+GR+T+S+  +T
Sbjct: 103 THVQFHHRDTNTKKPVHLRDGRVTVSLAAMT 133


>SB_33607| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)
          Length = 256

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 88  ILCPPIAVHDGGSRAYAPFV 29
           ++ PP  + DG SRA+APF+
Sbjct: 215 LIKPPSTIVDGRSRAHAPFI 234


>SB_27475| Best HMM Match : PCMT (HMM E-Value=5.5)
          Length = 63

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 273 GCLNHIEENDEVLVAGFGRKGHA 341
           G  N +EEN  +LV G GRKG++
Sbjct: 39  GNANLLEENRLILVTGDGRKGYS 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,090,706
Number of Sequences: 59808
Number of extensions: 365164
Number of successful extensions: 758
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)