Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1242
         (399 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    27   0.079
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   3.0  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   6.9  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   6.9  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   6.9  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   6.9  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
            ORF for hypotheticalprotein. ).
          Length = 998

 Score = 27.1 bits (57), Expect = 0.079
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -1

Query: 132  LPELSSDLVAALTSLDMYDFPHFVLFM*TINY--LTLKICSARSTH 1
            L E + +L  AL+S++   F HFVL M  IN+  +T  +  AR  H
Sbjct: 870  LVEFALELKKALSSINEQSFNHFVLKM-GINHGPVTAGVIGARKPH 914


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 193 QLERINVYYNEASGGKYVPRASXXTWSPA 279
           QL+R ++ +N    G+  PR+   + SPA
Sbjct: 720 QLKRTDIIHNYIMRGEASPRSPNASPSPA 748


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 258 GCAGHVLAAGGFIVVYIDALQLQVRVP 178
           G  G V A G  +VVYI      +R P
Sbjct: 60  GMLGFVSAMGNGMVVYIFLSTKSLRTP 86


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 85  YVRFPSFCFIYVNY 44
           Y++FP+   IY NY
Sbjct: 156 YMKFPAIYEIYPNY 169


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 85  YVRFPSFCFIYVNY 44
           Y++FP+   IY NY
Sbjct: 156 YMKFPAIYEIYPNY 169


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 181 DSDLQLERINVYYNEASGGKYV 246
           D+ L+   I  Y N+  GG++V
Sbjct: 72  DARLKFSNIAPYLNQIYGGQFV 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,239
Number of Sequences: 438
Number of extensions: 1707
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)