Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS1235
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g06710.1 68414.m00713 pentatricopeptide (PPR) repeat-containi...    31   0.77 
At5g46100.1 68418.m05668 pentatricopeptide (PPR) repeat-containi...    30   1.0  
At4g20090.1 68417.m02938 pentatricopeptide (PPR) repeat-containi...    29   2.4  
At4g19440.1 68417.m02860 pentatricopeptide (PPR) repeat-containi...    28   4.1  
At3g54980.1 68416.m06100 pentatricopeptide (PPR) repeat-containi...    27   7.2  
At4g33760.1 68417.m04793 tRNA synthetase class II (D, K and N) f...    27   9.5  

>At1g06710.1 68414.m00713 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 946

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
 Frame = +2

Query: 221 TRRGILFRASERDHQDAANSIMGIVVEN-IEPXIHWKPQLIDGILKXGDRVHTMSLXRAS 397
           T   ++ R  +   QD A+ ++  ++EN   P +    ++IDG+ K G       L +  
Sbjct: 670 TYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMM 729

Query: 398 APPGLRPNEIIDQFHVTNFNVRLEIES 478
              G +PN +     +  F +  +IE+
Sbjct: 730 EEKGCQPNVVTYTAMIDGFGMIGKIET 756


>At5g46100.1 68418.m05668 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 472

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 299 ENIEPXIHWKPQLIDGILKXGDRVHTMSLXRASAPPGLRPNEI 427
           + IEP +     L+DG+ K G  +  M L       G RPN +
Sbjct: 256 KGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMV 298


>At4g20090.1 68417.m02938 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 660

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 335 LIDGILKXGDRVHTMSLXRASAPPGLRPNEII 430
           LI G+ K G     MSL R  A  G +PN ++
Sbjct: 368 LISGLFKEGKAEEAMSLWRKMAEKGCKPNIVV 399


>At4g19440.1 68417.m02860 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 825

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +2

Query: 296 VENIEPXIHWKPQLIDGILKXGDRVHTMSLXRASAPPGLRPNEI 427
           +E +EP +     LIDG  K G  V    L R      + PN+I
Sbjct: 708 MEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKI 751


>At3g54980.1 68416.m06100 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 851

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 335 LIDGILKXGDRVHTMSLXRASAPPGLRPNEII 430
           LIDG+LK G+ +    L       GL P+EII
Sbjct: 730 LIDGLLKDGNLILASELYTEMQAVGLVPDEII 761


>At4g33760.1 68417.m04793 tRNA synthetase class II (D, K and N)
           family protein similar to SP|P36419 Aspartyl-tRNA
           synthetase (EC 6.1.1.12) (Aspartate--tRNA ligase)
           (AspRS) {Thermus thermophilus}; contains Pfam profile
           PF00152: tRNA synthetases class II (D, K and N)
          Length = 664

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 373 VDPVSXLEDSVDQLRLPVDVRFDVLDHYTH 284
           V PV+ +  ++D+LRL V    D++DH  H
Sbjct: 479 VGPVTSVNKTLDRLRLFVAHDMDLIDHSKH 508


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,982,763
Number of Sequences: 28952
Number of extensions: 169321
Number of successful extensions: 539
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)