Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS315A03f
(433 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0210 + 14324539-14324609,14324735-14325740,14325838-143273... 30 0.70
02_04_0157 + 20388761-20388763,20389807-20389935,20390206-203903... 29 2.1
07_03_0512 - 18954515-18955972 28 2.8
04_04_0981 + 29912275-29912814 28 2.8
01_04_0143 + 16689471-16689498,16689687-16689818,16689974-166900... 28 2.8
03_05_1097 + 30393336-30393578,30393661-30393780,30393859-303940... 28 3.7
05_04_0310 + 20114415-20117819 27 6.5
05_04_0069 - 17639386-17641380 27 6.5
01_06_1580 - 38406740-38407257,38407481-38407552,38408309-384083... 27 6.5
11_06_0719 + 26612152-26612856,26613102-26613110,26614272-26615198 27 8.6
08_01_0022 - 163512-163817,165963-166032,166074-166151,166399-16... 27 8.6
>08_02_0210 +
14324539-14324609,14324735-14325740,14325838-14327390,
14327473-14327601,14328345-14328510
Length = 974
Score = 30.3 bits (65), Expect = 0.70
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 160 IRH*INRIKYEGVCSHRCLSGSGCAGRGRLMLSERRPRM 276
IRH +N K+ C +SG C L++S R PRM
Sbjct: 739 IRHRVNLAKHTCTCREWQVSGKPCPHALALIISTRNPRM 777
>02_04_0157 + 20388761-20388763,20389807-20389935,20390206-20390349,
20390690-20390835,20390915-20391071,20391312-20391370,
20391466-20391664,20392232-20392381,20392471-20392607,
20392717-20392863,20392975-20393076,20395655-20395712,
20395816-20395917,20396236-20396273,20396409-20396535,
20397092-20397259,20397356-20397487,20400222-20400331,
20400400-20400460,20400929-20401106,20401194-20401399,
20401552-20401671,20402523-20402621,20404177-20404386,
20404704-20404843,20404945-20405053,20405351-20405431,
20405523-20405693,20405825-20405974,20407029-20407202,
20407453-20407479,20407688-20407758,20407843-20407942,
20408305-20408361,20409457-20409513,20409656-20409736,
20410336-20410421,20410535-20410649
Length = 1466
Score = 28.7 bits (61), Expect = 2.1
Identities = 21/73 (28%), Positives = 33/73 (45%)
Frame = +1
Query: 115 QYFRHTSNALVIFSRIRH*INRIKYEGVCSHRCLSGSGCAGRGRLMLSERRPRMQTDFKS 294
QY + T A++I S R + +Y G+ + + CA RGRL E R ++
Sbjct: 839 QYRQQTKAAVIIQSYCRSYLAHSQYMGL--KKAAITTQCAWRGRLARRELRKLKMAAKET 896
Query: 295 AALQRVLRPIQXQ 333
ALQ ++ Q
Sbjct: 897 GALQAAKNKLEKQ 909
>07_03_0512 - 18954515-18955972
Length = 485
Score = 28.3 bits (60), Expect = 2.8
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -3
Query: 407 PTGDNGRNVSNTVR---LMXSVRSLQRGCX*IGRNTRCSAADLKSVC 276
P G +G+ + V L +VRSL +GR R AA++K+VC
Sbjct: 408 PLGVDGKRRDSFVEAAELERAVRSLMDDASEVGRKVREKAAEMKAVC 454
>04_04_0981 + 29912275-29912814
Length = 179
Score = 28.3 bits (60), Expect = 2.8
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Frame = +1
Query: 133 SNALVIFSRIRH*INRIKYEGVCSHRCLSGSGCAGRGRLMLSERRPRMQ----TDFKSAA 300
S + + R+ I R + G+ S +G G GRG +++ + RP+ + F+ A
Sbjct: 59 SGSAAVVGRVYSLIERERRMGLRSRSVAAGGGGGGRG-IVVRDERPKSRAFGWVSFRKAT 117
Query: 301 LQRVLRPIQXQPRCSERTEXISLTVFETFLP 393
RV+ R+ +S T ET P
Sbjct: 118 SDRVVE--VDDGAALARSSSVSATAVETRAP 146
>01_04_0143 +
16689471-16689498,16689687-16689818,16689974-16690013,
16690214-16690280,16690349-16690431,16690755-16690821,
16692741-16692821,16693696-16693791,16694172-16694198
Length = 206
Score = 28.3 bits (60), Expect = 2.8
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 144 CYFFENSPLNKSHQI*RCMLS-SLPVWLWVC 233
CY E + L++ HQI C ++ S V +W C
Sbjct: 71 CYHLEEADLHQCHQILTCTINGSSLVMIWCC 101
>03_05_1097 +
30393336-30393578,30393661-30393780,30393859-30394017,
30394184-30394225,30394336-30394508,30394600-30394705,
30394795-30394824
Length = 290
Score = 27.9 bits (59), Expect = 3.7
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Frame = +2
Query: 248 SCYQNVDQGCRRTLSLPH-----CSAYYGQFXDNHVVANELXALASLYLKRSYHYLLSAL 412
S YQ V + + +PH CSA+Y +HV + + R+ HYL +L
Sbjct: 14 SAYQEVKSSPKHAI-VPHNNLLGCSAFYNPVEGHHVQKPHIVPSCKVNFTRASHYLYRSL 72
>05_04_0310 + 20114415-20117819
Length = 1134
Score = 27.1 bits (57), Expect = 6.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 172 INRIKYEGVCSHRCLSGSGCAGRGRLML 255
+N+++ E C RCL G G GRG L
Sbjct: 48 LNQLRAEAGCVERCLGGGG-GGRGNCEL 74
>05_04_0069 - 17639386-17641380
Length = 664
Score = 27.1 bits (57), Expect = 6.5
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +2
Query: 68 DESLLEVAFCASVCKGSTFDIRQTHLL-FFREFATK*IASNMKVYALIVAC 217
+ S ++VA C ++ G + + + + L FREF + I N+ + IVAC
Sbjct: 216 ESSHMDVASCNALVAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVAC 266
>01_06_1580 -
38406740-38407257,38407481-38407552,38408309-38408365,
38408476-38408532,38408643-38408699,38408809-38408865,
38409371-38409424,38409744-38409800,38410023-38410076,
38412208-38412220,38413530-38413580,38414134-38414193,
38414640-38414761,38415033-38415894,38416468-38416667,
38417159-38417238,38417525-38417619
Length = 821
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -3
Query: 320 GRNTRCSAADLKSVCILGRRSDSMSLPRPAHPEPDR 213
G NT D KSV ++ SD P P EP+R
Sbjct: 662 GGNTSRRLNDRKSVIVIDSDSDEDEDPHPEQHEPER 697
>11_06_0719 + 26612152-26612856,26613102-26613110,26614272-26615198
Length = 546
Score = 26.6 bits (56), Expect = 8.6
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 217 SGSGCAGRGRLMLSERRPRMQTDFKSAALQRVLRPIQXQ-PRCSERTEXISLTV 375
+G G RG+L + R + + S AL R +R + R SE I TV
Sbjct: 332 AGDGARRRGQLFVCNHRTLIDPVYVSVALDRPVRAVSYSLSRLSELISPIGRTV 385
>08_01_0022 -
163512-163817,165963-166032,166074-166151,166399-166439,
166830-166880,166997-167065,167924-168019,169217-169328,
169629-169774,169965-170015,170171-170281,170378-170447,
172496-172935
Length = 546
Score = 26.6 bits (56), Expect = 8.6
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -3
Query: 257 DSMSLPRPAHPEPDRQR*EHTPSYLMRFI*WRILE 153
+S S PRP HPE D E P + R + RILE
Sbjct: 10 ESSSPPRP-HPEADMVNKEKDPEEMKRKLKERILE 43
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,708,722
Number of Sequences: 37544
Number of extensions: 211040
Number of successful extensions: 576
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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