Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312H01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    26   3.9  
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    25   5.2  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    25   5.2  
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    25   6.8  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    25   9.0  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.0  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    25   9.0  

>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = +1

Query: 253 TMVLQLQLLRTPHAYLTILPTSPLSTP 333
           T+ + LQ+L TP++ L + PT+PL+ P
Sbjct: 368 TIPVSLQVL-TPNSSLKVDPTTPLTAP 393


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 21/75 (28%), Positives = 34/75 (45%)
 Frame = -2

Query: 493 KAVNIISQNQRITNIFSLTIFKGSTHNRSFNSREPEGP*FLNQHLVSLGKNSSMGLTEVK 314
           KA+  I ++ RI  +  L IF G T   + N    +   + N+  V+   N    +T V 
Sbjct: 250 KAIKDIVRSWRIYGLCILWIFSGETQAIAVNVLMGQWMKWSNKFSVAQINNYPTVITAVG 309

Query: 313 LVKSLGMRGVCVKAA 269
           +V +LG   +  K A
Sbjct: 310 VVSTLGASVISDKLA 324


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 493 KAVNIISQNQRITNIFSLTIFKGSTHNRSFNSREP 389
           K  N  +Q+ +   +  L  F GS  NRS N+REP
Sbjct: 466 KVANASAQS-KFEAVNQLKKFLGSLGNRSLNAREP 499


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 12  LWKMWEGGRLKALAADLSSPMVSKDWSEFRRKELVSYFN 128
           +W +  G  LK L   ++ P+ +  ++E R+  LVS  N
Sbjct: 206 IWDVLSGQCLKTLVEPINVPLSNLQFTENRKYLLVSNLN 244


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 100 LNSDQSFETIGLLRSAASAFSLPPS 26
           +  D   + + LL   AS+FSLPPS
Sbjct: 565 MGGDAKVDRLRLLMVFASSFSLPPS 589


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 121 YETSSLRLNSDQSFETIGLLRSAASAF 41
           YE+  L L+SD + E+  LLR   +AF
Sbjct: 302 YESEILNLSSDTNLESDFLLRQIHAAF 328


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 262 LQLQLLRTPHAYLTILPTSPLSTPWMNFFPNSLNAG*ETMDL 387
           LQ  L+R PH+   ++  SP+     N F  S N    T+D+
Sbjct: 179 LQTGLVRLPHSIKDLVHASPIRLLNNNVFVGSKNTTLFTIDV 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,288,628
Number of Sequences: 5004
Number of extensions: 48764
Number of successful extensions: 105
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)