Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312H01f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1585 - 38448403-38448512,38448836-38448916,38449388-384494...    30   1.3  
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646...    28   4.0  
03_06_0539 - 34600323-34601273                                         27   6.9  
03_06_0534 + 34570080-34571030                                         27   6.9  
12_02_0828 - 23502276-23503472,23503568-23504002,23504097-235042...    27   9.1  
01_06_1410 + 37116414-37116695,37116796-37116902,37117148-371176...    27   9.1  

>01_06_1585 -
           38448403-38448512,38448836-38448916,38449388-38449475,
           38449571-38449666,38449823-38449879,38449960-38450466,
           38450701-38451393,38451612-38451683
          Length = 567

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 357 TKCWLRNYGPSGSLELKDRLC 419
           T CW++NYGP+   + + +LC
Sbjct: 457 TLCWVKNYGPANCWQTEIKLC 477


>04_03_0660 +
           18463011-18463322,18463424-18463516,18464500-18464607,
           18464892-18465044,18465256-18465354,18465443-18465571,
           18465987-18466166,18466208-18466246,18466247-18466363,
           18466445-18466609
          Length = 464

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = -2

Query: 520 KRKTTASIEKAVNIISQNQRITNIFSLTIFKGSTHNRSFNSREPEGP*FLNQHLVSLGKN 341
           K+++  S  K   +++ ++    +  +TI KG+ HN       P      ++H +SLGK 
Sbjct: 155 KKRSQYSAFKDELLVNPSEVTRRMEEMTISKGNRHNSEGTGVLPRAEIVHDEHPLSLGKT 214

Query: 340 S 338
           S
Sbjct: 215 S 215


>03_06_0539 - 34600323-34601273
          Length = 316

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 359 SEFGKKFIHGVDRGEVGKIVRYAWGVRKSCNCSTIVT 249
           SE GKK + G D   VG + ++++GV +S +  +  T
Sbjct: 105 SEGGKKAVIGADGRRVGYLQKFSYGVYESSSSGSART 141


>03_06_0534 + 34570080-34571030
          Length = 316

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 359 SEFGKKFIHGVDRGEVGKIVRYAWGVRKSCNCSTIVT 249
           SE GKK + G D   VG + ++++GV +S +  +  T
Sbjct: 105 SEGGKKAVIGADGRRVGYLQKFSYGVYESSSSGSART 141


>12_02_0828 -
           23502276-23503472,23503568-23504002,23504097-23504213,
           23505330-23505396,23505685-23505725,23506161-23506237,
           23506699-23506945
          Length = 726

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 330 PMDEFFPKLTKCWLRNYGPSGSLELKDRL 416
           P DEF+  L   + +NY PS  L +  RL
Sbjct: 201 PDDEFYNDLLSVYDKNYDPSAELAILGRL 229


>01_06_1410 +
           37116414-37116695,37116796-37116902,37117148-37117649,
           37118211-37118326,37119007-37119211
          Length = 403

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +3

Query: 105 KELVSYFNYTNMYTHNMYALRYAFCELLNLVNVVGQIFILDLFLGGS 245
           ++++  FNY+    H    L   F    N ++  G IF++D++ G S
Sbjct: 236 RDIICAFNYSCCCLHRRKDLVLYFRHAFNALSKRGGIFVMDVYGGTS 282


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,191,490
Number of Sequences: 37544
Number of extensions: 290863
Number of successful extensions: 620
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)