Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312H01f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g27230.1 68416.m03404 expressed protein                             28   3.3  
At3g11540.2 68416.m01408 gibberellin signal transduction protein...    28   3.3  
At3g11540.1 68416.m01407 gibberellin signal transduction protein...    28   3.3  
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden...    28   4.4  
At2g07360.1 68415.m00843 SH3 domain-containing protein contains ...    27   5.8  
At5g40830.1 68418.m04957 expressed protein                             27   7.7  
At4g20860.1 68417.m03026 FAD-binding domain-containing protein s...    27   7.7  

>At3g27230.1 68416.m03404 expressed protein
          Length = 410

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -2

Query: 391 PEGP*FLNQHLVSLGKNSSMGLTEVKLVKSLG 296
           PE   FL +H + LGK+S  G+TE  +V S+G
Sbjct: 104 PELKLFLQRHQLPLGKDSRTGITE--MVSSVG 133


>At3g11540.2 68416.m01408 gibberellin signal transduction protein
           (SPINDLY) identical to spindly GB:AAC49446 (GI:1589778)
           [Arabidopsis thaliana]; contains Pfam profile PF00515
           TPR Domain
          Length = 732

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 285 TPRIPNDFTNFTSVNPMDEFFPKLTKCWLR 374
           TP + N F  F S N + +  PK+ + W R
Sbjct: 465 TPALSNGFVTFGSFNNLAKITPKVLQVWAR 494


>At3g11540.1 68416.m01407 gibberellin signal transduction protein
           (SPINDLY) identical to spindly GB:AAC49446 (GI:1589778)
           [Arabidopsis thaliana]; contains Pfam profile PF00515
           TPR Domain
          Length = 914

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 285 TPRIPNDFTNFTSVNPMDEFFPKLTKCWLR 374
           TP + N F  F S N + +  PK+ + W R
Sbjct: 647 TPALSNGFVTFGSFNNLAKITPKVLQVWAR 676


>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
           identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
           thaliana}
          Length = 444

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 16  GKCGKEAG*RHWQLILAVQWFRRIGQSSGARNL 114
           G+CG + G + W++I       + GQS G  +L
Sbjct: 10  GQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDL 42


>At2g07360.1 68415.m00843 SH3 domain-containing protein contains
           Pfam profile PF00018: SH3 domain
          Length = 1196

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/63 (26%), Positives = 26/63 (41%)
 Frame = +3

Query: 258 GAAVAAFTHTPRIPNDFTNFTSVNPMDEFFPKLTKCWLRNYGPSGSLELKDRLCVLPLNI 437
           G  V      PRI N  TN  + +  +    +L       Y PSG+ EL  +L  +   I
Sbjct: 197 GGGVTRADVVPRIVNQLTNEATNSEFEFHARRLQALKALTYSPSGNSELLSKLYEIVFGI 256

Query: 438 VNE 446
           + +
Sbjct: 257 LEK 259


>At5g40830.1 68418.m04957 expressed protein
          Length = 414

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -2

Query: 376 FLNQHLVSLGKNSSMGLTEVKLVKSLG 296
           FL QH + LGK+S  G+T+  +V S+G
Sbjct: 109 FLQQHQLPLGKDSRTGITQ--MVASVG 133


>At4g20860.1 68417.m03026 FAD-binding domain-containing protein
           simlar to SP|P30986 reticuline oxidase precursor
           (Berberine-bridge-forming enzyme) (BBE)
           (Tetrahydroprotoberberine synthase) [Eschscholzia
           californica]; contains PF01565 FAD binding domain
          Length = 530

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = +3

Query: 237 GGSFRNYGAAVAAFTHTPRIPNDFTNFTSVNPMDEFFPKLTKCW 368
           GG   ++G  ++      R+P   T F S +PM     KL   W
Sbjct: 232 GGGAASFGVVLSWKVKLARVPEKVTCFISQHPMGPSMNKLVHRW 275


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,697,811
Number of Sequences: 28952
Number of extensions: 245155
Number of successful extensions: 530
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)