Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312G12f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50014| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_56092| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_36288| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_34130| Best HMM Match : Spb1_C (HMM E-Value=9)                      27   9.4  
SB_18832| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_50014| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 615

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 486 LKTKLCKNAPLILSKLHDKYSTILKRLXWKY*LSCTQRH 370
           L T+  K A ++L++ H K  T+L R   K  +  T+RH
Sbjct: 187 LLTRRHKKAQILLTRRHKKAQTLLTRRHKKAQILLTRRH 225



 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 486 LKTKLCKNAPLILSKLHDKYSTILKRLXWKY*LSCTQRH 370
           L T+  K A ++L++ H K  T+L R   K  +  T+RH
Sbjct: 253 LLTRRHKKAQILLTRRHKKAQTLLTRRHKKAQILLTRRH 291


>SB_56092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 211

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 486 LKTKLCKNAPLILSKLHDKYSTILKRLXWKY*LSCTQRH 370
           L T+  K A ++L++ H K  T+L R   K  +  T+RH
Sbjct: 163 LLTRRHKKAQILLTRRHKKAQTLLTRRHKKAQILLTRRH 201


>SB_36288| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 421

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 486 LKTKLCKNAPLILSKLHDKYSTILKRLXWKY*LSCTQRH 370
           L T+  K A ++L++ H K  T+L R   K  +  T+RH
Sbjct: 163 LLTRRHKKAQILLTRRHKKAQTLLTRRHKKAQILLTRRH 201



 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 486 LKTKLCKNAPLILSKLHDKYSTILKRLXWKY*LSCTQRH 370
           L T+  K A ++L++ H K  T+L R   K  +  T+RH
Sbjct: 196 LLTRRHKKAQILLTRRHKKAQTLLTRRHKKAQILLTRRH 234



 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 486 LKTKLCKNAPLILSKLHDKYSTILKRLXWKY*LSCTQRH 370
           L T+  K A ++L++ H K  T+L R   K  +  T+RH
Sbjct: 218 LLTRRHKKAQILLTRRHKKAQTLLTRRHKKAQILLTRRH 256



 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 486 LKTKLCKNAPLILSKLHDKYSTILKRLXWKY*LSCTQRH 370
           L T+  K A ++L++ H K  T+L R   K  +  T+RH
Sbjct: 251 LLTRRHKKAQILLTRRHKKAQTLLTRRHKKAQILLTRRH 289


>SB_34130| Best HMM Match : Spb1_C (HMM E-Value=9)
          Length = 416

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 486 LKTKLCKNAPLILSKLHDKYSTILKRLXWKY*LSCTQRH 370
           L T+  K A ++L++ H K  T+L R   K  +  T+RH
Sbjct: 97  LLTRRHKKAQILLTRRHKKAQTLLTRRHKKAQILLTRRH 135



 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 486 LKTKLCKNAPLILSKLHDKYSTILKRLXWKY*LSCTQRH 370
           L T+  K A ++L++ H K  T+L R   K  +  T+RH
Sbjct: 350 LLTRRHKKAQILLTRRHKKAQTLLTRRHKKAQILLTRRH 388


>SB_18832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 60

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -2

Query: 310 M*HHRPKWKVIIEYDLFHSFHIFFIKQISLYRCEDSSTADFYLSLTVT 167
           M H   KW   + +     FH+F  + I+    + SSTA   L LT T
Sbjct: 1   MFHEPEKWPFHVSWTEEWPFHVFEYRNIASKNRKYSSTASKRLHLTFT 48


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,138,584
Number of Sequences: 59808
Number of extensions: 249958
Number of successful extensions: 508
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)