Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312G10f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g20450.1 68415.m02387 60S ribosomal protein L14 (RPL14A) 93 1e-19
At4g27090.1 68417.m03894 60S ribosomal protein L14 (RPL14B) ribo... 91 3e-19
At5g02840.2 68418.m00227 myb family transcription factor contain... 29 1.4
At5g02840.1 68418.m00226 myb family transcription factor contain... 29 1.4
At1g64530.1 68414.m07315 RWP-RK domain-containing protein simila... 29 1.4
At1g01520.1 68414.m00068 myb family transcription factor similar... 29 1.4
At5g15890.1 68418.m01859 expressed protein 29 2.5
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila... 28 3.3
At1g09770.1 68414.m01096 myb family transcription factor contain... 28 3.3
At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase fa... 28 4.4
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila... 27 5.8
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila... 27 5.8
At1g02290.1 68414.m00171 expressed protein 27 5.8
At5g51150.1 68418.m06342 expressed protein similar to unknown pr... 27 7.7
At4g34950.1 68417.m04954 nodulin family protein similar to nodul... 27 7.7
At1g47710.1 68414.m05302 serpin, putative / serine protease inhi... 27 7.7
>At2g20450.1 68415.m02387 60S ribosomal protein L14 (RPL14A)
Length = 134
Score = 92.7 bits (220), Expect = 1e-19
Identities = 49/115 (42%), Positives = 71/115 (61%)
Frame = +3
Query: 6 RYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKY 185
R+VE GRVALV G GKLV +VDV+DQ RALVD P + R Q+ L +L LT +
Sbjct: 5 RFVEIGRVALVNYGEDYGKLVVIVDVVDQNRALVDAPD--MERIQMNLKRLSLTDIVIDI 62
Query: 186 AFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKR 350
+++ +A A + KW +S W +KL +++RA + D+DRFK+ A++KR
Sbjct: 63 NRVPKKKVLIEAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIKR 117
>At4g27090.1 68417.m03894 60S ribosomal protein L14 (RPL14B)
ribosomal protein L14 - Human,PIR3:JC5954
Length = 134
Score = 91.5 bits (217), Expect = 3e-19
Identities = 48/115 (41%), Positives = 69/115 (60%)
Frame = +3
Query: 6 RYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKY 185
RYVE GRVALV G GKLV +VDV+DQ RALVD P + R Q+ +L LT +
Sbjct: 5 RYVEIGRVALVNYGEDHGKLVVIVDVVDQNRALVDAP--DMERIQMNFKRLSLTDIVIDI 62
Query: 186 AFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKR 350
+ + +A A + KW +S W +KL +++RA + D+DRFK+ A++K+
Sbjct: 63 NRVPKKKALIEAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIKK 117
>At5g02840.2 68418.m00227 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 293
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 195 APTRLVRKAWTDAKLNEKWTESQ 263
AP + VRKA+T K E WTE +
Sbjct: 33 APEKKVRKAYTITKSRESWTEGE 55
>At5g02840.1 68418.m00226 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 293
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 195 APTRLVRKAWTDAKLNEKWTESQ 263
AP + VRKA+T K E WTE +
Sbjct: 33 APEKKVRKAYTITKSRESWTEGE 55
>At1g64530.1 68414.m07315 RWP-RK domain-containing protein similar to
nodule inception protein [Lotus japonicus] GI:6448579;
contains Pfam profile: PF02042 RWP-RK domain
Length = 841
Score = 29.5 bits (63), Expect = 1.4
Identities = 34/125 (27%), Positives = 51/125 (40%), Gaps = 13/125 (10%)
Frame = +3
Query: 63 LVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKYAFTAPTRLVRKAWTDAKLN 242
L ++ DV + R D GS R ++N + T+FRL P+R V A D+ +
Sbjct: 658 LSNLQDVKIENRDAEDSAGSSTSRASCKVNPICETRFRLPTHNQEPSRQV--ALDDSDSS 715
Query: 243 EKWTESQWA----QKLANKE---------KRAQMTDYDRFKLTAARVKRNRARTAVFKSL 383
K + WA Q A+ K D RFK++ V + V K L
Sbjct: 716 SKNMTNFWAHLTCQDTASPTILQHKLVSIKATYREDIIRFKISPESVSITELKQQVAKRL 775
Query: 384 KVKAA 398
K++ A
Sbjct: 776 KLETA 780
>At1g01520.1 68414.m00068 myb family transcription factor similar to
myb-related protein GI:2505876 from [Arabidopsis
thaliana]
Length = 287
Score = 29.5 bits (63), Expect = 1.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 189 FTAPTRLVRKAWTDAKLNEKWTESQ 263
F PT+ VRK +T K E WTE +
Sbjct: 44 FEDPTKKVRKPYTITKSRENWTEQE 68
>At5g15890.1 68418.m01859 expressed protein
Length = 526
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -2
Query: 118 PGPSTSARVWSITSTTLTNFPFKGPSATRATRP 20
P P T +VW+ TS T P +AT+P
Sbjct: 286 PSPDTDFKVWNYTSYNFTLHVMWSPFLVKATKP 318
>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
to 60S ribosomal protein L6 GI:7208784 from [Cicer
arietinum]
Length = 233
Score = 28.3 bits (60), Expect = 3.3
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 12 VEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPG--SGVPRQQIRLNQLHL 164
+ PG V ++ G KGK V + + LV GP +GVP + R+NQ ++
Sbjct: 89 ITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLR--RVNQAYV 139
>At1g09770.1 68414.m01096 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 844
Score = 28.3 bits (60), Expect = 3.3
Identities = 19/81 (23%), Positives = 37/81 (45%)
Frame = +3
Query: 186 AFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRART 365
AF VRK + + + ++++ E+RA+ T + + + T + +
Sbjct: 692 AFQEEMENVRKKMEEDEKKAEHMKAKYKTYTKGHERRAE-TVWTQIEATLKQAEIGGTEV 750
Query: 366 AVFKSLKVKAARAGTFGKKNI 428
FK+LK + A +F KKN+
Sbjct: 751 ECFKALKRQEEMAASFRKKNL 771
>At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase
family protein low similarity to phosphatidylinositol
4-kinase type-II beta [Homo sapiens] GI:20159767;
contains Pfam profile PF00454: Phosphatidylinositol 3-
and 4-kinase
Length = 530
Score = 27.9 bits (59), Expect = 4.4
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = +3
Query: 144 RLNQLHLTKFRLKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRF 323
R + +H K RL+ A PT + D L + S + +E A + DY RF
Sbjct: 64 RSDNVHTVKRRLQIALNFPTEESSLTYGDMVLTNDLSSSVRVGETGFREVAAYLLDYGRF 123
>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 12 VEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPG--SGVPRQQIRLNQLHL 164
+ PG V ++ G KGK V + + LV GP +GVP + R+NQ ++
Sbjct: 89 ITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLR--RVNQAYV 139
>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +3
Query: 12 VEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPG--SGVPRQQIRLNQLHL 164
+ PG V ++ G KGK V + + LV GP +GVP + R+NQ ++
Sbjct: 89 ITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLR--RVNQAYV 139
>At1g02290.1 68414.m00171 expressed protein
Length = 443
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 113 TRQWST*ATDPLKPTPSHKIPPQIRVHSPYSSREESV 223
T Q S T+P+ P+H +P +RV S YS E+++
Sbjct: 326 TTQRSIQGTEPVFHDPTHTVPSALRV-SNYSITEQNI 361
>At5g51150.1 68418.m06342 expressed protein similar to unknown
protein (gb|AAD46013.1)
Length = 531
Score = 27.1 bits (57), Expect = 7.7
Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Frame = -2
Query: 295 RFSLFANFWAH*LSVHFSLSLASV-HAFLTRRVGAVNAYLRRNFVRWS--------WFKR 143
+F L+ + W H S+ FSL+ A V ++F+ R +Y R F++ + R
Sbjct: 205 KFHLWGSHWRHGDSLLFSLACAQVMYSFIMRPETLPKSY--REFIQKTGPVARPVYQAVR 262
Query: 142 ICCLGTPLPGPSTSARVWS 86
CC G P+ S SA + S
Sbjct: 263 ECCRGGPIDVASLSAYISS 281
>At4g34950.1 68417.m04954 nodulin family protein similar to
nodulin-like protein [Arabidopsis thaliana] GI:3329368,
nodule-specific protein Nlj70 [Lotus japonicus]
GI:3329366
Length = 567
Score = 27.1 bits (57), Expect = 7.7
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Frame = -2
Query: 481 AGFLVAFLVRTFFAAALGIFFLPKVPARAAFTFKLLNTAVLARFLLTRAAVNLNL-S*SV 305
A FLV V F +FFL ++P F + A F + V + L S +
Sbjct: 175 ASFLVLLSVVPFAVCLTAVFFLREIPPSTTFAEDNEESKYFAVFNIVAVVVAVYLQSYDI 234
Query: 304 ICARFSLFANFWAH*LSVHFSLSLA-SVHAFLTRRV 200
I + F+ +A L + + +A HAF+ +V
Sbjct: 235 IGIKTGAFSIAFASILLILLASPVAVPFHAFIRSKV 270
>At1g47710.1 68414.m05302 serpin, putative / serine protease
inhibitor, putative similar to phloem serpin-1
[Cucurbita maxima] GI:9937311; contains Pfam profile
PF00079: Serpin (serine protease inhibitor)
Length = 391
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +3
Query: 63 LVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKYAFTA 197
L ++D I T +D + +PR+Q+++ + + KF+ + F A
Sbjct: 247 LSDLLDKIVSTPGFLD---NHIPRRQVKVREFKIPKFKFSFGFDA 288
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,003,878
Number of Sequences: 28952
Number of extensions: 219627
Number of successful extensions: 676
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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