Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS312G06f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 169 1e-42
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 128 2e-30
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 113 1e-25
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 77 1e-14
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 49 3e-06
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 42 3e-04
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 35 0.035
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.062
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.25
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 31 0.58
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 31 0.58
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024) 30 1.0
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 1.3
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12) 29 2.3
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5) 28 5.4
SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 169 bits (411), Expect = 1e-42
Identities = 72/157 (45%), Positives = 112/157 (71%)
Frame = +3
Query: 51 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVT 230
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER++G T+++ F+T + T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225
Query: 231 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 410
++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + GQTREHA+LA T GVK L
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHL 285
Query: 411 IVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYXP 521
++ VNKMD ++E R+EEIK +++ ++KK+G+ P
Sbjct: 286 VILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 128 bits (310), Expect = 2e-30
Identities = 58/60 (96%), Positives = 59/60 (98%)
Frame = +3
Query: 111 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 290
MGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 113 bits (271), Expect = 1e-25
Identities = 50/84 (59%), Positives = 65/84 (77%)
Frame = +3
Query: 183 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 362
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 363 TREHALLAFTLGVKQLIVGVNKMD 434
TREHA+L +LGV QLIV +NK+D
Sbjct: 61 TREHAILVRSLGVTQLIVAINKLD 84
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 76.6 bits (180), Expect = 1e-14
Identities = 33/36 (91%), Positives = 35/36 (97%)
Frame = +3
Query: 6 GHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 113
GHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 14 GHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 48.8 bits (111), Expect = 3e-06
Identities = 28/107 (26%), Positives = 50/107 (46%)
Frame = +3
Query: 9 HVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITID 188
H D+GK+T T L+ G I +EA + K D ++ ER+RGI++
Sbjct: 18 HPDAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGISVA 68
Query: 189 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 329
++ F + I+D PGH+DF ++ + D ++++ G
Sbjct: 69 TSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 41.9 bits (94), Expect = 3e-04
Identities = 30/117 (25%), Positives = 52/117 (44%)
Frame = +3
Query: 150 KLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 329
+ K E ER ITI + Y +D PGH + M+ G + D A+L++A
Sbjct: 49 RFKNELERNITIKLG--------YANAKVDCPGHDILMATMLNGAAVMDAALLLIAGNES 100
Query: 330 EFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYI 500
QT EH + +K +++ NK+D + ++ ++++I K V I
Sbjct: 101 ------CPQPQTSEHLAAIEIMKLKHILILQNKIDLVKESQAKDQYDQILKFVQGTI 151
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 35.1 bits (77), Expect = 0.035
Identities = 29/107 (27%), Positives = 45/107 (42%)
Frame = +3
Query: 174 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 353
GIT I + + + +D PGH F G D +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP----- 177
Query: 354 NGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSS 494
QT+E A GV +I +NK+D P + P + IK ++S+
Sbjct: 178 --QTKEAISHAQAAGV-PIIFAINKIDK---PNANP--DNIKTQLST 216
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 34.3 bits (75), Expect = 0.062
Identities = 24/70 (34%), Positives = 34/70 (48%)
Frame = +3
Query: 225 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 404
+T ID PGH F G + D VL+VAA G ++ ++ HA+ A
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTVESIRHAMHAKV---- 129
Query: 405 QLIVGVNKMD 434
LIV +NK+D
Sbjct: 130 PLIVAINKID 139
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 32.3 bits (70), Expect = 0.25
Identities = 24/59 (40%), Positives = 28/59 (47%)
Frame = +3
Query: 9 HVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITI 185
HVD GKST L+ G I K + K VLDKL+ ERERGIT+
Sbjct: 1949 HVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERERGITV 1991
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 31.1 bits (67), Expect = 0.58
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 13/87 (14%)
Frame = +3
Query: 147 DKLKAERERGITIDIALWKFETSK-------------YYVTIIDAPGHRDFIKNMITGTS 287
DK +ERGIT+D+ F+ + +T++D PGH IK +I G
Sbjct: 65 DKNPQSQERGITLDLGFSSFQVALPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGG-- 122
Query: 288 QADCAVLIVAAGTGEFEAGISKNGQTR 368
A +I GT E G ++G+ +
Sbjct: 123 ----AQIIGECGT--IEGGFGQSGKVK 143
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 31.1 bits (67), Expect = 0.58
Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 3/110 (2%)
Frame = +3
Query: 9 HVDSGKSTTTGHLIYKCGGI--DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGIT 182
HVD GKST T L+ K G I K +F ++ L E
Sbjct: 26 HVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRKDEQDRCITIKSTAISLYYELPESDF 85
Query: 183 IDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 329
I K + + + +ID+PGH DF + D A+++V +G
Sbjct: 86 EYITQPKDPKERGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135
>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
Length = 1213
Score = 30.3 bits (65), Expect = 1.0
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Frame = -2
Query: 499 MYEDTS---FLISSNLGSLYGGSVESILFTPTMSCLTPRVKASKAC------SRV*PFLE 347
+Y+D S L+S N L ++E IL TPT + + K C + P
Sbjct: 796 LYQDPSKLTALLSCNFNDLKIDNMEVILLTPTSMAASMATSSKKVCPSSAPTTTTNPTPS 855
Query: 346 IPASNSPVPAAT 311
+ NSP+P+ T
Sbjct: 856 VTNGNSPIPSGT 867
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 231 IIDAPGHRDFIKNMITGTSQADCAVLIV 314
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
Length = 347
Score = 29.1 bits (62), Expect = 2.3
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 9/101 (8%)
Frame = +3
Query: 6 GHVDSGKST-----TTGHLIYKCGGIDKRTI-EKFEKEA---QEMGKGSFKYAWVLDKLK 158
G+VD+GKST T G L G +R K E E+ +G + +
Sbjct: 236 GNVDAGKSTLLGVLTHGELDNGRGTARQRLFRHKHEMESGRTSSVGNDILGFDNTGQVVN 295
Query: 159 AERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITG 281
+ G +D A E+SK +T ID GH ++K I G
Sbjct: 296 KAEQHGANVDWAKICKESSK-VITFIDLAGHERYLKTTIFG 335
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -1
Query: 176 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQMTS 36
TT+T S YPS+ + +F D T N TT V +T+
Sbjct: 236 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSITA 282
>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 950
Score = 27.9 bits (59), Expect = 5.4
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +3
Query: 306 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVK-QLIVGVNKMDSTEPPYSEPRFEEIKK 482
++VAA EF A ++KNG ++ F G + QL +G + M+ TE P P FE++K
Sbjct: 371 VVVAACGAEFTAVVTKNG-----SVYTFGQGNQGQLGLGSSMME-TEFPERIPLFEKVKA 424
Query: 483 EVSS 494
S
Sbjct: 425 RTVS 428
>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
Length = 737
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = -1
Query: 185 DCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQMTS 36
D TT+T S YPS+ + +F D T N TT V +++
Sbjct: 344 DFPTTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 393
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -1
Query: 176 TTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQMTS 36
TT+T S YPS+ + +F D T N TT V +++
Sbjct: 548 TTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVQSISA 594
>SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1049
Score = 27.1 bits (57), Expect = 9.4
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Frame = +3
Query: 276 TGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVG--VNKMDSTEPP 449
TGT+ D + + G+F++ ++ N + LLA +G+ + G V++ ST
Sbjct: 790 TGTNVLDSIISLTPGKIGQFDSSVTMNEDSTSE-LLASIMGLTKTTSGLLVSQTVSTHTT 848
Query: 450 YS-------EPRFEEIKKEVSS 494
S EP EE+ +SS
Sbjct: 849 ASTGIMSTAEPHVEELNSGISS 870
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,580,442
Number of Sequences: 59808
Number of extensions: 351520
Number of successful extensions: 942
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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