Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312G02f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1611| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.8  
SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_21069| Best HMM Match : KE2 (HMM E-Value=0.59)                      29   1.8  
SB_58300| Best HMM Match : AAA_5 (HMM E-Value=0)                       28   5.4  

>SB_1611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 341

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 20/56 (35%), Positives = 28/56 (50%)
 Frame = +1

Query: 88  KGQTRGIKYSNARNKKCPEKSKITTRC*GFETKT*KSRNSDCKYKVDFRFIKEKWR 255
           K QTR  K    ++K    KSK+ TR    + +T K +   CK KV  R  K++ R
Sbjct: 86  KVQTRKCKVQTCKSKVQTRKSKVLTR--KSKVQTRKCKVQTCKCKVQTRKSKKQTR 139


>SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2208

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +2

Query: 92  VKQEESSTQTQEIKNAPRKAKLRXDVKVLKQKLKSREIVIVNIKSILDLL 241
           +K       + E  +     KLR ++K+L+ +LK +   +  +KS +D L
Sbjct: 749 LKHARDQIASLESSSTDASKKLRAEIKILEAQLKQKSQTVDELKSTMDTL 798


>SB_21069| Best HMM Match : KE2 (HMM E-Value=0.59)
          Length = 341

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 20/56 (35%), Positives = 28/56 (50%)
 Frame = +1

Query: 88  KGQTRGIKYSNARNKKCPEKSKITTRC*GFETKT*KSRNSDCKYKVDFRFIKEKWR 255
           K QTR  K    ++K    KSK+ TR    + +T K +   CK KV  R  K++ R
Sbjct: 86  KVQTRKCKVQTCKSKVQTRKSKVLTR--KSKVQTRKCKVQTCKCKVQTRKSKKQTR 139


>SB_58300| Best HMM Match : AAA_5 (HMM E-Value=0)
          Length = 1736

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +2

Query: 95   KQEESSTQTQEIKNAPRKA-KLRXDVKVLKQKLKSREIVIVNIKSILDL 238
            KQEE+ T  QEI  + ++A + + +++ LKQK     + +   K  +++
Sbjct: 1413 KQEEADTALQEITTSMQRASESKSEMETLKQKQGEESVKLEKRKKAIEI 1461


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,630,611
Number of Sequences: 59808
Number of extensions: 179539
Number of successful extensions: 433
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)