Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312G02f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23830.1 68418.m02797 MD-2-related lipid recognition domain-c...    29   2.5  
At4g39952.1 68417.m05658 pentatricopeptide (PPR) repeat-containi...    27   5.8  
At4g38040.1 68417.m05373 exostosin family protein contains Pfam ...    27   5.8  
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai...    27   7.7  
At5g42880.1 68418.m05226 hypothetical protein contains Pfam prof...    27   7.7  
At5g23820.1 68418.m02796 MD-2-related lipid recognition domain-c...    27   7.7  
At5g16630.1 68418.m01947 DNA repair protein Rad4 family low simi...    27   7.7  
At1g18390.1 68414.m02297 protein kinase family protein contains ...    27   7.7  

>At5g23830.1 68418.m02797 MD-2-related lipid recognition
           domain-containing protein / ML domain-containing protein
           contains Pfam profile PF02221: ML domain
          Length = 164

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 70  LENVLYKGQTRGIKYS-NARNKKCPEKSKITTRC*GFE 180
           L++VLY G   GIKYS + R K   E+  I   C  F+
Sbjct: 116 LKDVLYVGFDEGIKYSVSLRQKTAEEEDPIIKMCIDFK 153


>At4g39952.1 68417.m05658 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 726

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 194 SREIVIVNIKSILDLLKKNGDF*LXWNLNCE 286
           S ++ I  + S++DL  K GD  + W + CE
Sbjct: 414 SLDLTISVVNSLIDLYGKMGDLTVAWRMFCE 444


>At4g38040.1 68417.m05373 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 425

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -3

Query: 303 MSIIKISQFKFQXN*KSPFFFNKSKIDFIFTITISRLLSFCFKTLTSXR 157
           M+I+K SQF F     SP    KS    + T+ I   +S  + +L S R
Sbjct: 1   MTIVKPSQFSFSGGGSSPLCSLKSS---LLTVAILTFISLFYLSLNSLR 46


>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
           Pfam profiles  PF00270:DEAD/DEAH box helicase and
           PF00271:  Helicase conserved C-terminal domain;
           identical to cDNA RH27 helicase, partial GI:4033334
          Length = 633

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 101 EESSTQTQEIKNAPRKAKLRXDVKVLKQKLKSRE 202
           E+ S++ +EIK    K + R + K LKQ     E
Sbjct: 7   EQHSSENEEIKKKKHKKRARDEAKKLKQPAMEEE 40


>At5g42880.1 68418.m05226 hypothetical protein contains Pfam profile
           PF05701: Plant protein of unknown function (DUF827)
          Length = 751

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = +2

Query: 77  MSYIKVKQE-ESSTQTQEIKNAPRKAKLRXD--VKVLKQKLKSREIVIVNIKSILDLLK 244
           ++ IK  QE ESS + +EI N+PR   +  +   ++ KQ L+S E     +  I+  ++
Sbjct: 550 LAAIKALQETESSQRFEEINNSPRSIIISVEEYYELSKQALESEEEANTRLSEIVSQIE 608


>At5g23820.1 68418.m02796 MD-2-related lipid recognition
           domain-containing protein / ML domain-containing protein
           contains Pfam profile PF02221: ML domain
          Length = 164

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +1

Query: 31  NEEDLLVNMTLEF-LENVLYKGQTRGIKYS-NARNKKCPEKSKITTRC*GFE 180
           NE ++      E  L +VLY G    IKYS + R K   E+  I   C  F+
Sbjct: 102 NEAEIEAGTNFELTLSDVLYVGYDEEIKYSVSLRRKTLEEEDPIIKMCVDFK 153


>At5g16630.1 68418.m01947 DNA repair protein Rad4 family low
           similarity to SP|Q01831 DNA-repair protein complementing
           XP-C cells (Xeroderma pigmentosum group C complementing
           protein) {Homo sapiens}; contains Pfam profile PF03835:
           DNA repair protein Rad4
          Length = 865

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 121 ARNKKCPEKSKITTRC*GFETKT*KSRNSD 210
           A+N K PEK ++  R  G +++  KSRN D
Sbjct: 802 AKNVKAPEKQRVAKR--GEKSRVRKSRNED 829


>At1g18390.1 68414.m02297 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 605

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 258 KSPFFFNKSKIDFIFTITISRLLSFCFKT--LTSXRNFAFLGAF 133
           ++PFF N S I+F      S  L   F+T  LT  RN + L +F
Sbjct: 119 RTPFFVNPSHINFTILYNCSDHLLEDFRTYPLTCARNTSLLRSF 162


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,612,014
Number of Sequences: 28952
Number of extensions: 141906
Number of successful extensions: 368
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)