Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS312F12f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_9329| Best HMM Match : Lectin_C (HMM E-Value=0)                     33   0.14 
SB_27216| Best HMM Match : Lectin_C (HMM E-Value=1.9)                  31   0.44 
SB_46352| Best HMM Match : L71 (HMM E-Value=0.19)                      31   0.58 
SB_21510| Best HMM Match : zf-C2H2 (HMM E-Value=6.3e-07)               29   1.8  
SB_9786| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)               29   3.1  
SB_25410| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)               29   3.1  
SB_4382| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)               29   3.1  
SB_21737| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_14469| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_24278| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_33276| Best HMM Match : Glyco_transf_43 (HMM E-Value=0)             28   5.4  
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   5.4  
SB_39159| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_36728| Best HMM Match : ArsD (HMM E-Value=1.6)                      27   9.4  
SB_28559| Best HMM Match : Y_phosphatase (HMM E-Value=0)               27   9.4  
SB_53809| Best HMM Match : F5_F8_type_C (HMM E-Value=1.6e-23)          27   9.4  

>SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2516

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 24/57 (42%), Positives = 31/57 (54%)
 Frame = +3

Query: 237  YFFSWEHAPTRSLEVDWLDARNICRRHCMDAVSLETPQENEFVKQRIARGNIRYIWT 407
            Y+FS  +A T  L+  W++AR+ CR+   D VSL T  EN FV   I      Y WT
Sbjct: 1452 YYFS--NATTADLKT-WMEARDFCRKSRGDLVSLRTANENAFVFSEIK--TRYYYWT 1503


>SB_9329| Best HMM Match : Lectin_C (HMM E-Value=0)
          Length = 577

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
 Frame = +3

Query: 231 HSYFFSWEHAPTRSLEVDWLDARNICRRHCMDAVSLETPQENEFVKQRIARGNIRYIWTS 410
           H Y F   H  T      W  AR  C+R   D VS+ + QE +F+  ++   N  +IWT 
Sbjct: 309 HCYLFRMFHRLT------WPQARLRCQREGGDLVSILSQQEKDFLIYQMKTVNGIWIWTG 362

Query: 411 -GRKCNFAGCDRGDLQPPNVNGWFW 482
              +    G +  D  P +   W +
Sbjct: 363 LNDRSVERGYEWSDGSPVSFTSWLY 387


>SB_27216| Best HMM Match : Lectin_C (HMM E-Value=1.9)
          Length = 168

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = +3

Query: 279 VDWLDARNICRRHCMDA--VSLETPQENEFVKQRI-ARGNIRYIWTSGRKCNFAGC 437
           V W +A   C  H +DA   S ET ++  FV++ +  R N+  I+   ++C+  GC
Sbjct: 24  VSWSEAARFC--HVLDASLASAETLEKLRFVRRHVMMRSNVTDIFIGLQQCHDTGC 77


>SB_46352| Best HMM Match : L71 (HMM E-Value=0.19)
          Length = 179

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 8/114 (7%)
 Frame = +3

Query: 156 LALPDPRSCANRVRHSTYRDARGVLHSYFFSW-----EHAPTRSLEVDWLDARNICRRHC 320
           L L DP  C N ++    +++  ++H  F  W     E     + E++   + N CRR+ 
Sbjct: 13  LELVDPPGCRNSIKDKGEKESMEIVHVKFCKWLLGVFEFCSILAPEIETNFSTNRCRRY- 71

Query: 321 MDAVSLETPQENEFVKQRIARGNIRYIWTSGRKC---NFAGCDRGDLQPPNVNG 473
               ++  P     +  R  RG  R+ + +  +C    + G D G  +  +V G
Sbjct: 72  --MATVGKPVVPAALMNRPTRGERRFAYWALAECILAYYVGTDEGVSEVLHVAG 123


>SB_21510| Best HMM Match : zf-C2H2 (HMM E-Value=6.3e-07)
          Length = 229

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
 Frame = -3

Query: 450 GHRGHSRRNYIYDQKSKCNVCFRERSFALQIRFPGVFLRKQRP--CNACGRCSLRPANPL 277
           G+R   R  +  ++  KC  C +  + A +++   +    ++P  C+ CG+CS +  N  
Sbjct: 22  GNRNQHREKHYGNKPFKCEQCGKCFTEAARLK-DHILHTGEKPYQCSQCGKCSAKSGNHK 80

Query: 276 LSCVLEHVPS*RNTNVVLPVHRGMSNGVL 190
           +  VL H  S +    VL V R +++ V+
Sbjct: 81  IH-VLIH--SGKKPLSVLSVIRSLNSAVM 106


>SB_9786| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
          Length = 129

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 282 DWLDARNICRRHCMDAVSLETPQENEFVKQRIA 380
           +W DA ++CR      V +E+  E+EFV + +A
Sbjct: 23  NWYDAESMCRDLGGYLVKIESKSEDEFVSRELA 55


>SB_25410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 279 VDWLDARNICRRHCMDAVSLETPQENEFV 365
           ++W DAR  C +   D V + + QEN FV
Sbjct: 24  MNWADARTACGKLGGDLVKITSEQENTFV 52


>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
          Length = 3445

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 282 DWLDARNICRRHCMDAVSLETPQENEFVKQRIA 380
           +W DA ++CR      V +E+  E+EFV + +A
Sbjct: 23  NWYDAESMCRDLGGYLVKIESKSEDEFVSRELA 55


>SB_4382| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
          Length = 492

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 282 DWLDARNICRRHCMDAVSLETPQENEFVKQRIA 380
           +W DA ++CR      V +E+  E+EFV + +A
Sbjct: 386 NWYDAESMCRDLGGYLVKIESKSEDEFVSRELA 418


>SB_21737| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +3

Query: 363 VKQRIARGNIRYIWTSGRKCNFAGCDRGDLQPPNVNGWFWSXF 491
           +KQ  A    R+ W S R+C   G +R       V  W WS F
Sbjct: 1   MKQLFAIHGQRFAWKSSRECQICGENR-----QQVRKWCWSSF 38


>SB_14469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 254

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 402 KCNVCFRERSFALQIRFPGVFLRKQRPCNACGRC 301
           +C  CF +RS +L+I        K   CN CG+C
Sbjct: 117 QCGKCF-DRSTSLKIHLLTHSGHKPHQCNKCGKC 149


>SB_24278| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 363

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = +3

Query: 285 WLDARNICRRHCMDAVSLETPQENEFVKQRIARGNIRYIWTSGRKCNFAG 434
           W DA  +CR      +++    E E +++ I   N+ + W   R  +  G
Sbjct: 275 WRDAMTLCREQGAGLLTVRDANEMEVIRKHIKEKNL-FFWLGARYSHVNG 323


>SB_33276| Best HMM Match : Glyco_transf_43 (HMM E-Value=0)
          Length = 1182

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 276 EVDWLDARNICRRHCMDAVSLETPQENEFV 365
           E+ W DAR  C     D V + + +ENEFV
Sbjct: 134 EMAWNDARAACGDMGGDLVQIASKEENEFV 163


>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2323

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 285 WLDARNICRRHCMDAVSLETPQENEFVKQRI 377
           W + R  C+    D VS+ET +E  F+ ++I
Sbjct: 370 WTENREKCKSRNGDLVSMETEEEWSFINKKI 400


>SB_39159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 728

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = -3

Query: 444 RGHSRRNYIYDQKSKCNVCFRERSFALQI-RFPGVFLRKQRP--CNACGRC 301
           + H    ++ +++ KC +C +   F   + R       K++P  C  CG+C
Sbjct: 534 KAHVNTTHLGEKRFKCEICEKCFGFLTHLKRHVKTVHEKEKPHHCEKCGKC 584


>SB_36728| Best HMM Match : ArsD (HMM E-Value=1.6)
          Length = 364

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 306 CRRHCMDAVSLETPQENEFVKQRIARGNIR 395
           C++H +D +S + P  N F    I    +R
Sbjct: 93  CKQHSVDMISSKRPARNSFHSSEITNSEVR 122


>SB_28559| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 893

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 453 VGHRGHSRRNYIYD-QKSKC-NVCFRERSFALQIR 355
           +G   H+ RN ++   +SK   VCF+ + F +QIR
Sbjct: 80  MGRITHNNRNQVFSLSRSKIVKVCFKRKRFFIQIR 114


>SB_53809| Best HMM Match : F5_F8_type_C (HMM E-Value=1.6e-23)
          Length = 486

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 162 LPDPRSCANRVRHSTYRDARGVLHSYFFSWEHAPTRSLE 278
           +PD R  A    +  Y  +RG LHS  +SWE     S E
Sbjct: 351 IPDHRFSATSQYNGNYPPSRGRLHS-IYSWEPRAKSSSE 388


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,508,430
Number of Sequences: 59808
Number of extensions: 412005
Number of successful extensions: 1721
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1720
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)